Hb_003540_040

Information

Type -
Description -
Location Contig3540: 28461-31450
Sequence    

Annotation

kegg
ID tcc:TCM_031384
description Transcription factor TFIIIC, putative isoform 1
nr
ID KDP27044.1
description hypothetical protein JCGZ_20979 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20979 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36694: 28211-31426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_040 0.0 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
2 Hb_001776_110 0.0529361065 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
3 Hb_125000_010 0.0569859153 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
4 Hb_022250_040 0.0633670503 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
5 Hb_000392_270 0.0637444708 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
6 Hb_009711_030 0.0642277334 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
7 Hb_002097_110 0.0645064207 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_000371_080 0.0664481472 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
9 Hb_000720_120 0.0716448454 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
10 Hb_002603_100 0.0731233999 - - ATATH9, putative [Ricinus communis]
11 Hb_001138_050 0.0738995739 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
12 Hb_000015_080 0.0743018826 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
13 Hb_118419_020 0.0765161229 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
14 Hb_011360_140 0.0766852866 - - 40S ribosomal protein S19, putative [Ricinus communis]
15 Hb_004662_030 0.0767579321 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
16 Hb_003392_040 0.0778128941 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
17 Hb_011689_080 0.0778136261 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
18 Hb_000398_180 0.0786662408 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
19 Hb_010436_070 0.0790213899 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
20 Hb_001243_050 0.0793882108 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_040 Hb_003540_040 Hb_001776_110 Hb_001776_110 Hb_003540_040--Hb_001776_110 Hb_125000_010 Hb_125000_010 Hb_003540_040--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_003540_040--Hb_022250_040 Hb_000392_270 Hb_000392_270 Hb_003540_040--Hb_000392_270 Hb_009711_030 Hb_009711_030 Hb_003540_040--Hb_009711_030 Hb_002097_110 Hb_002097_110 Hb_003540_040--Hb_002097_110 Hb_006569_020 Hb_006569_020 Hb_001776_110--Hb_006569_020 Hb_010436_070 Hb_010436_070 Hb_001776_110--Hb_010436_070 Hb_004662_030 Hb_004662_030 Hb_001776_110--Hb_004662_030 Hb_001776_110--Hb_002097_110 Hb_000029_030 Hb_000029_030 Hb_001776_110--Hb_000029_030 Hb_125000_010--Hb_010436_070 Hb_125000_010--Hb_009711_030 Hb_118419_020 Hb_118419_020 Hb_125000_010--Hb_118419_020 Hb_002411_170 Hb_002411_170 Hb_125000_010--Hb_002411_170 Hb_125000_010--Hb_022250_040 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_000977_080 Hb_000977_080 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_001824_070 Hb_001824_070 Hb_009711_030--Hb_001824_070 Hb_009711_030--Hb_002097_110 Hb_002097_110--Hb_004662_030 Hb_015001_020 Hb_015001_020 Hb_002097_110--Hb_015001_020 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_002097_110--Hb_001824_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.3196 24.9888 26.0782 21.0522 78.376 90.3514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.356 100.245 69.9505 29.0467 22.938

CAGE analysis