Hb_003125_040

Information

Type -
Description -
Location Contig3125: 27109-29039
Sequence    

Annotation

kegg
ID rcu:RCOM_1506370
description COMM domain-containing protein, putative
nr
ID XP_012079841.1
description PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
swissprot
ID Q9P000
description COMM domain-containing protein 9 OS=Homo sapiens GN=COMMD9 PE=1 SV=2
trembl
ID A0A067K3W3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11297 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33042: 27146-29031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_040 0.0 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
2 Hb_002942_020 0.0695929703 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_060809_010 0.07007116 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
4 Hb_006569_020 0.0733772002 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
5 Hb_000928_240 0.0759600386 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
6 Hb_000317_430 0.0772099015 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
7 Hb_118419_020 0.0772100285 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
8 Hb_000175_070 0.0785601761 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
9 Hb_118977_020 0.0800385455 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
10 Hb_022250_040 0.082408624 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
11 Hb_125000_010 0.0844353264 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
12 Hb_003086_110 0.0844461561 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
13 Hb_004662_030 0.0845482999 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
14 Hb_007632_090 0.0848961957 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
15 Hb_000365_360 0.0856533215 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_098709_010 0.0868581391 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
17 Hb_000152_430 0.0870226444 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
18 Hb_000316_110 0.087334707 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
19 Hb_009711_030 0.0876062754 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
20 Hb_007193_100 0.0888863662 - - syntaxin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003125_040 Hb_003125_040 Hb_002942_020 Hb_002942_020 Hb_003125_040--Hb_002942_020 Hb_060809_010 Hb_060809_010 Hb_003125_040--Hb_060809_010 Hb_006569_020 Hb_006569_020 Hb_003125_040--Hb_006569_020 Hb_000928_240 Hb_000928_240 Hb_003125_040--Hb_000928_240 Hb_000317_430 Hb_000317_430 Hb_003125_040--Hb_000317_430 Hb_118419_020 Hb_118419_020 Hb_003125_040--Hb_118419_020 Hb_027892_060 Hb_027892_060 Hb_002942_020--Hb_027892_060 Hb_002942_020--Hb_118419_020 Hb_003540_040 Hb_003540_040 Hb_002942_020--Hb_003540_040 Hb_168918_020 Hb_168918_020 Hb_002942_020--Hb_168918_020 Hb_000905_190 Hb_000905_190 Hb_002942_020--Hb_000905_190 Hb_060809_010--Hb_000317_430 Hb_000035_380 Hb_000035_380 Hb_060809_010--Hb_000035_380 Hb_003728_020 Hb_003728_020 Hb_060809_010--Hb_003728_020 Hb_000175_070 Hb_000175_070 Hb_060809_010--Hb_000175_070 Hb_003005_020 Hb_003005_020 Hb_060809_010--Hb_003005_020 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_022250_040 Hb_022250_040 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_159558_030 Hb_159558_030 Hb_006569_020--Hb_159558_030 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_001824_070 Hb_001824_070 Hb_000928_240--Hb_001824_070 Hb_003878_190 Hb_003878_190 Hb_000928_240--Hb_003878_190 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110 Hb_000318_380 Hb_000318_380 Hb_000928_240--Hb_000318_380 Hb_000317_430--Hb_000035_380 Hb_000317_430--Hb_000175_070 Hb_000317_430--Hb_118419_020 Hb_000365_360 Hb_000365_360 Hb_000317_430--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_000317_430--Hb_007193_100 Hb_010436_070 Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_118419_020--Hb_000175_070 Hb_118419_020--Hb_125000_010 Hb_118419_020--Hb_002097_110 Hb_118419_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.6683 12.1076 12.9654 17.7619 80.6718 84.2089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.2506 73.4247 48.8199 23.1916 9.6882

CAGE analysis