Hb_001214_130

Information

Type -
Description -
Location Contig1214: 128701-138343
Sequence    

Annotation

kegg
ID rcu:RCOM_0186950
description nucleotide binding protein, putative
nr
ID XP_012087836.1
description PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
swissprot
ID Q5DQR4
description Syntaxin-binding protein 5-like OS=Mus musculus GN=Stxbp5l PE=2 SV=1
trembl
ID B9T1J5
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0186950 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nucleotide binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06559: 128744-137989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_130 0.0 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
2 Hb_028639_060 0.0548917249 - - transporter, putative [Ricinus communis]
3 Hb_003642_060 0.0561299954 - - hypothetical protein RCOM_1189860 [Ricinus communis]
4 Hb_000905_190 0.0610932388 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
5 Hb_003120_060 0.0640078731 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
6 Hb_000943_070 0.0676028963 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
7 Hb_000803_150 0.067891491 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
8 Hb_001030_120 0.0717070935 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_005928_060 0.0737675903 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
10 Hb_010608_010 0.0750118423 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
11 Hb_001221_230 0.0765456258 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002215_050 0.0772877188 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_001369_060 0.0784433544 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
14 Hb_003728_020 0.0795957831 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000035_380 0.080566987 - - -
16 Hb_003005_020 0.0809289502 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
17 Hb_000012_090 0.081233856 - - 3'-5' exonuclease, putative [Ricinus communis]
18 Hb_000365_360 0.0812527719 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_000421_260 0.0814077049 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
20 Hb_000019_230 0.0817777468 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001214_130 Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_001214_130--Hb_028639_060 Hb_003642_060 Hb_003642_060 Hb_001214_130--Hb_003642_060 Hb_000905_190 Hb_000905_190 Hb_001214_130--Hb_000905_190 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_028639_060--Hb_003642_060 Hb_000236_370 Hb_000236_370 Hb_028639_060--Hb_000236_370 Hb_000012_090 Hb_000012_090 Hb_028639_060--Hb_000012_090 Hb_000803_300 Hb_000803_300 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_003642_060--Hb_000905_190 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_002997_170 Hb_002997_170 Hb_000905_190--Hb_002997_170 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140 Hb_000019_230 Hb_000019_230 Hb_003120_060--Hb_000019_230 Hb_000188_100 Hb_000188_100 Hb_003120_060--Hb_000188_100 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003038_030 Hb_003038_030 Hb_003120_060--Hb_003038_030 Hb_003609_040 Hb_003609_040 Hb_000943_070--Hb_003609_040 Hb_000943_070--Hb_003642_060 Hb_005306_110 Hb_005306_110 Hb_000943_070--Hb_005306_110 Hb_003406_010 Hb_003406_010 Hb_000943_070--Hb_003406_010 Hb_000645_050 Hb_000645_050 Hb_000943_070--Hb_000645_050 Hb_000162_090 Hb_000162_090 Hb_000803_150--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.8567 14.7758 9.68174 8.87446 47.7254 59.0765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0369 34.858 30.9662 12.6637 10.3405

CAGE analysis