Hb_003609_040

Information

Type -
Description -
Location Contig3609: 44640-58820
Sequence    

Annotation

kegg
ID rcu:RCOM_0182520
description hypothetical protein
nr
ID XP_012070729.1
description PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
swissprot
ID A2RSJ4
description UHRF1-binding protein 1-like OS=Mus musculus GN=Uhrf1bp1l PE=1 SV=2
trembl
ID A0A067KSD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00804 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37183: 46936-49432 , PASA_asmbl_37184: 51914-58792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003609_040 0.0 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
2 Hb_000001_020 0.0491961252 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
3 Hb_007547_010 0.0570261694 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
4 Hb_000943_070 0.0608472191 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
5 Hb_000030_010 0.0641629311 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
6 Hb_000172_370 0.0757277561 - - -
7 Hb_003297_030 0.0766599308 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
8 Hb_000017_120 0.0768623596 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
9 Hb_007908_020 0.0785902151 - - zinc finger family protein [Populus trichocarpa]
10 Hb_000120_950 0.0808463994 - - PREDICTED: protein GRIP [Jatropha curcas]
11 Hb_003642_060 0.0816643983 - - hypothetical protein RCOM_1189860 [Ricinus communis]
12 Hb_005306_110 0.0816746046 - - casein kinase, putative [Ricinus communis]
13 Hb_002027_130 0.0830485377 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
14 Hb_002182_040 0.08356926 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_012340_030 0.084161963 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
16 Hb_002631_050 0.0853087852 - - membrane associated ring finger 1,8, putative [Ricinus communis]
17 Hb_168918_020 0.0857894209 - - pectin acetylesterase, putative [Ricinus communis]
18 Hb_000000_080 0.0858128067 - - lipoate-protein ligase B, putative [Ricinus communis]
19 Hb_002477_160 0.0869526524 - - hypothetical protein L484_013453 [Morus notabilis]
20 Hb_001214_130 0.087040989 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]

Gene co-expression network

sample Hb_003609_040 Hb_003609_040 Hb_000001_020 Hb_000001_020 Hb_003609_040--Hb_000001_020 Hb_007547_010 Hb_007547_010 Hb_003609_040--Hb_007547_010 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_000030_010 Hb_000030_010 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003297_030 Hb_003297_030 Hb_003609_040--Hb_003297_030 Hb_000025_200 Hb_000025_200 Hb_000001_020--Hb_000025_200 Hb_007908_020 Hb_007908_020 Hb_000001_020--Hb_007908_020 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000001_020--Hb_000107_390 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020 Hb_007547_010--Hb_000030_010 Hb_002182_040 Hb_002182_040 Hb_007547_010--Hb_002182_040 Hb_014720_160 Hb_014720_160 Hb_007547_010--Hb_014720_160 Hb_007547_010--Hb_000001_020 Hb_007547_010--Hb_003297_030 Hb_003642_060 Hb_003642_060 Hb_000943_070--Hb_003642_060 Hb_005306_110 Hb_005306_110 Hb_000943_070--Hb_005306_110 Hb_001214_130 Hb_001214_130 Hb_000943_070--Hb_001214_130 Hb_003406_010 Hb_003406_010 Hb_000943_070--Hb_003406_010 Hb_000645_050 Hb_000645_050 Hb_000943_070--Hb_000645_050 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_005062_070 Hb_005062_070 Hb_000030_010--Hb_005062_070 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000392_300 Hb_000392_300 Hb_000030_010--Hb_000392_300 Hb_148912_010 Hb_148912_010 Hb_000172_370--Hb_148912_010 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160 Hb_010863_080 Hb_010863_080 Hb_003297_030--Hb_010863_080 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_000179_210 Hb_000179_210 Hb_003297_030--Hb_000179_210 Hb_003297_030--Hb_000030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.5329 15.9678 13.9898 17.1213 57.9261 53.93
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.7343 38.2156 48.5263 10.131 13.1883

CAGE analysis