Hb_005306_110

Information

Type -
Description -
Location Contig5306: 77857-81354
Sequence    

Annotation

kegg
ID rcu:RCOM_0654970
description casein kinase, putative
nr
ID XP_002521378.1
description casein kinase, putative [Ricinus communis]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID B9S5V9
description Casein kinase, putative OS=Ricinus communis GN=RCOM_0654970 PE=3 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i isoform delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47362: 77088-81281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_110 0.0 - - casein kinase, putative [Ricinus communis]
2 Hb_033153_050 0.0594164479 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
3 Hb_001584_330 0.064128065 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
4 Hb_001623_420 0.0663518251 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_000943_070 0.0669773304 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
6 Hb_000120_950 0.0699936215 - - PREDICTED: protein GRIP [Jatropha curcas]
7 Hb_003642_060 0.0705538248 - - hypothetical protein RCOM_1189860 [Ricinus communis]
8 Hb_028639_060 0.0713021855 - - transporter, putative [Ricinus communis]
9 Hb_000120_800 0.0723493121 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
10 Hb_001862_190 0.0737669807 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
11 Hb_168707_030 0.0744740419 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
12 Hb_006400_040 0.0749219807 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
13 Hb_000134_090 0.0755769409 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
14 Hb_004109_200 0.0756454303 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
15 Hb_001030_120 0.0772814737 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_005662_030 0.0777819777 - - protein with unknown function [Ricinus communis]
17 Hb_000030_010 0.0778736931 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
18 Hb_033843_010 0.0786258722 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
19 Hb_109842_010 0.0790354761 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
20 Hb_002027_260 0.0792934926 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]

Gene co-expression network

sample Hb_005306_110 Hb_005306_110 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_001584_330 Hb_001584_330 Hb_005306_110--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_005306_110--Hb_001623_420 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060 Hb_001862_190 Hb_001862_190 Hb_033153_050--Hb_001862_190 Hb_007894_140 Hb_007894_140 Hb_033153_050--Hb_007894_140 Hb_001635_170 Hb_001635_170 Hb_033153_050--Hb_001635_170 Hb_029920_050 Hb_029920_050 Hb_033153_050--Hb_029920_050 Hb_033843_010 Hb_033843_010 Hb_033153_050--Hb_033843_010 Hb_001584_330--Hb_001623_420 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070 Hb_003609_040 Hb_003609_040 Hb_000943_070--Hb_003609_040 Hb_000943_070--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_000943_070--Hb_001214_130 Hb_003406_010 Hb_003406_010 Hb_000943_070--Hb_003406_010 Hb_000645_050 Hb_000645_050 Hb_000943_070--Hb_000645_050 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000754_060 Hb_000754_060 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_000436_070 Hb_000436_070 Hb_000120_950--Hb_000436_070 Hb_002477_160 Hb_002477_160 Hb_000120_950--Hb_002477_160 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_000905_190 Hb_000905_190 Hb_003642_060--Hb_000905_190 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
326.168 126.203 83.9336 91.5576 248.558 294.265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
234.626 169.31 212.745 89.0466 49.8166

CAGE analysis