Hb_000089_220

Information

Type -
Description -
Location Contig89: 251914-258144
Sequence    

Annotation

kegg
ID pop:POPTR_0660s00210g
description hypothetical protein
nr
ID XP_011001814.1
description PREDICTED: protein FAM133-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID U7DUH2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0660s00210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61574: 251946-258051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_220 0.0 - - PREDICTED: protein FAM133-like [Populus euphratica]
2 Hb_003406_010 0.0542490962 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
3 Hb_006185_050 0.0588809879 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
4 Hb_003642_060 0.0609780634 - - hypothetical protein RCOM_1189860 [Ricinus communis]
5 Hb_003001_140 0.065155268 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
6 Hb_003010_030 0.0654277521 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
7 Hb_000926_280 0.0668565981 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
8 Hb_048937_040 0.0682509777 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
9 Hb_002391_300 0.0685362188 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
10 Hb_001301_160 0.0687262634 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
11 Hb_000395_170 0.0687912662 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
12 Hb_000392_300 0.0693488889 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
13 Hb_001195_760 0.0696685908 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
14 Hb_148912_010 0.0705621288 - - conserved hypothetical protein [Ricinus communis]
15 Hb_096563_010 0.0714997758 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
16 Hb_000327_120 0.0734322241 - - FGFR1 oncogene partner, putative [Ricinus communis]
17 Hb_003001_120 0.0746396219 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
18 Hb_000661_250 0.0746986171 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
19 Hb_003929_160 0.0749666832 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
20 Hb_001511_020 0.0750757428 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_220 Hb_000089_220 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000327_120 Hb_000327_120 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010 Hb_001214_130 Hb_001214_130 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_000905_190 Hb_000905_190 Hb_003642_060--Hb_000905_190 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_011571_020 Hb_011571_020 Hb_003001_140--Hb_011571_020 Hb_001301_160 Hb_001301_160 Hb_003001_140--Hb_001301_160 Hb_003001_140--Hb_006185_050 Hb_000056_200 Hb_000056_200 Hb_003001_140--Hb_000056_200 Hb_000398_180 Hb_000398_180 Hb_003001_140--Hb_000398_180 Hb_000093_160 Hb_000093_160 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000926_280--Hb_003175_010 Hb_000030_300 Hb_000030_300 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_000926_280--Hb_002391_300 Hb_000926_280--Hb_000327_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3712 19.9603 20.5862 15.22 42.5815 52.6159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8608 44.2427 33.5026 15.2962 16.162

CAGE analysis