Hb_000392_300

Information

Type -
Description -
Location Contig392: 256204-260347
Sequence    

Annotation

kegg
ID rcu:RCOM_1514740
description hypothetical protein
nr
ID XP_012080237.1
description PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
swissprot
ID Q9STU3
description RINT1-like protein MAG2 OS=Arabidopsis thaliana GN=MAG2 PE=1 SV=1
trembl
ID A0A067KG71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11606 PE=4 SV=1
Gene Ontology
ID GO:0005783
description rint1-like protein mag2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39270: 258608-259267 , PASA_asmbl_39271: 257625-260063 , PASA_asmbl_39272: 257228-258343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_300 0.0 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
2 Hb_006065_020 0.0582313913 - - -
3 Hb_006185_050 0.0587105527 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
4 Hb_048937_040 0.0623855349 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
5 Hb_000030_010 0.0684164843 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
6 Hb_000089_220 0.0693488889 - - PREDICTED: protein FAM133-like [Populus euphratica]
7 Hb_002496_030 0.0697704456 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
8 Hb_010139_040 0.0722069817 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002876_110 0.0722394386 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001595_030 0.0722582938 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
11 Hb_000327_120 0.0726746855 - - FGFR1 oncogene partner, putative [Ricinus communis]
12 Hb_009646_030 0.075132356 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000120_950 0.0762610116 - - PREDICTED: protein GRIP [Jatropha curcas]
14 Hb_000879_200 0.0765082937 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
15 Hb_005662_030 0.0789203869 - - protein with unknown function [Ricinus communis]
16 Hb_004221_020 0.0791594721 - - protein binding protein, putative [Ricinus communis]
17 Hb_004724_200 0.0805703174 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
18 Hb_001439_150 0.0819736898 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
19 Hb_000317_020 0.0822454039 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
20 Hb_000453_170 0.0832779225 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000392_300 Hb_000392_300 Hb_006065_020 Hb_006065_020 Hb_000392_300--Hb_006065_020 Hb_006185_050 Hb_006185_050 Hb_000392_300--Hb_006185_050 Hb_048937_040 Hb_048937_040 Hb_000392_300--Hb_048937_040 Hb_000030_010 Hb_000030_010 Hb_000392_300--Hb_000030_010 Hb_000089_220 Hb_000089_220 Hb_000392_300--Hb_000089_220 Hb_002496_030 Hb_002496_030 Hb_000392_300--Hb_002496_030 Hb_000000_080 Hb_000000_080 Hb_006065_020--Hb_000000_080 Hb_005662_030 Hb_005662_030 Hb_006065_020--Hb_005662_030 Hb_006065_020--Hb_000089_220 Hb_000721_010 Hb_000721_010 Hb_006065_020--Hb_000721_010 Hb_006065_020--Hb_006185_050 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_006185_050--Hb_000089_220 Hb_000327_120 Hb_000327_120 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_000010_330 Hb_000010_330 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_005062_070 Hb_005062_070 Hb_000030_010--Hb_005062_070 Hb_003609_040 Hb_003609_040 Hb_000030_010--Hb_003609_040 Hb_007547_010 Hb_007547_010 Hb_000030_010--Hb_007547_010 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.15083 4.04095 3.83296 2.9661 9.47315 8.45506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.35303 6.45579 7.99612 3.35202 3.59676

CAGE analysis