Hb_001623_420

Information

Type -
Description -
Location Contig1623: 329796-337656
Sequence    

Annotation

kegg
ID rcu:RCOM_1023990
description nucleotide binding protein, putative
nr
ID XP_002518197.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID A2AH22
description Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1
trembl
ID B9RWS8
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_1023990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14722: 329854-337253 , PASA_asmbl_14723: 329854-337253 , PASA_asmbl_14724: 330698-330977 , PASA_asmbl_14725: 331097-337293 , PASA_asmbl_14726: 331629-331985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_420 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_001584_330 0.0495665793 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
3 Hb_000120_950 0.0619082276 - - PREDICTED: protein GRIP [Jatropha curcas]
4 Hb_000224_170 0.0627586148 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
5 Hb_005306_110 0.0663518251 - - casein kinase, putative [Ricinus communis]
6 Hb_002685_140 0.0666518618 - - PREDICTED: membrin-11 [Jatropha curcas]
7 Hb_010381_070 0.0672762966 - - PREDICTED: protein STU1-like [Jatropha curcas]
8 Hb_000030_010 0.0681969344 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
9 Hb_002027_260 0.0687318856 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
10 Hb_001511_020 0.0716661206 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
11 Hb_000327_120 0.0716728436 - - FGFR1 oncogene partner, putative [Ricinus communis]
12 Hb_001439_150 0.0734421837 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
13 Hb_006400_040 0.0749102716 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
14 Hb_000754_060 0.0762569997 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
15 Hb_168707_030 0.0771508163 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
16 Hb_000139_410 0.0772567575 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
17 Hb_175338_030 0.0786033662 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
18 Hb_006185_050 0.0800973129 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
19 Hb_003642_060 0.0815718863 - - hypothetical protein RCOM_1189860 [Ricinus communis]
20 Hb_001377_290 0.0822599179 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001623_420 Hb_001623_420 Hb_001584_330 Hb_001584_330 Hb_001623_420--Hb_001584_330 Hb_000120_950 Hb_000120_950 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_005306_110 Hb_005306_110 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000754_060 Hb_000754_060 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_000436_070 Hb_000436_070 Hb_000120_950--Hb_000436_070 Hb_002477_160 Hb_002477_160 Hb_000120_950--Hb_002477_160 Hb_031527_040 Hb_031527_040 Hb_000224_170--Hb_031527_040 Hb_000926_330 Hb_000926_330 Hb_000224_170--Hb_000926_330 Hb_000061_420 Hb_000061_420 Hb_000224_170--Hb_000061_420 Hb_181235_010 Hb_181235_010 Hb_000224_170--Hb_181235_010 Hb_003777_330 Hb_003777_330 Hb_000224_170--Hb_003777_330 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060 Hb_000327_120 Hb_000327_120 Hb_002685_140--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_010381_070--Hb_000139_410 Hb_002375_020 Hb_002375_020 Hb_010381_070--Hb_002375_020 Hb_004109_200 Hb_004109_200 Hb_010381_070--Hb_004109_200 Hb_010381_070--Hb_000754_060 Hb_010381_070--Hb_001584_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.9815 34.2893 20.519 17.5367 57.1026 49.1334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.2979 43.2787 54.0466 19.8066 10.8787

CAGE analysis