Hb_002375_020

Information

Type -
Description -
Location Contig2375: 38092-41428
Sequence    

Annotation

kegg
ID rcu:RCOM_1238810
description ankyrin repeat-containing protein, putative
nr
ID XP_012065050.1
description PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
swissprot
ID Q01484
description Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4
trembl
ID A0A067L782
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05709 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24932: 38275-41391 , PASA_asmbl_24933: 37459-40921 , PASA_asmbl_24937: 42368-42586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_020 0.0 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
2 Hb_010381_070 0.0647731031 - - PREDICTED: protein STU1-like [Jatropha curcas]
3 Hb_000923_020 0.0703380444 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
4 Hb_001301_160 0.0718196696 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
5 Hb_002027_260 0.0736260587 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
6 Hb_004109_200 0.0741751012 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
7 Hb_006332_020 0.0758125723 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_001377_290 0.0767522343 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
9 Hb_004195_160 0.0774142932 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
10 Hb_000554_020 0.0779543017 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
11 Hb_000155_190 0.0786001749 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001252_110 0.0823740113 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
13 Hb_000621_080 0.0835039298 - - conserved hypothetical protein [Ricinus communis]
14 Hb_168707_030 0.0839281925 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
15 Hb_000139_410 0.084809706 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
16 Hb_001138_050 0.0857458194 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
17 Hb_001030_120 0.0866930779 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_001913_010 0.086740556 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
19 Hb_000099_240 0.0870029056 - - 60S ribosomal protein L7a, putative [Ricinus communis]
20 Hb_012634_010 0.0870717991 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]

Gene co-expression network

sample Hb_002375_020 Hb_002375_020 Hb_010381_070 Hb_010381_070 Hb_002375_020--Hb_010381_070 Hb_000923_020 Hb_000923_020 Hb_002375_020--Hb_000923_020 Hb_001301_160 Hb_001301_160 Hb_002375_020--Hb_001301_160 Hb_002027_260 Hb_002027_260 Hb_002375_020--Hb_002027_260 Hb_004109_200 Hb_004109_200 Hb_002375_020--Hb_004109_200 Hb_006332_020 Hb_006332_020 Hb_002375_020--Hb_006332_020 Hb_000139_410 Hb_000139_410 Hb_010381_070--Hb_000139_410 Hb_010381_070--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_010381_070--Hb_001623_420 Hb_000754_060 Hb_000754_060 Hb_010381_070--Hb_000754_060 Hb_001584_330 Hb_001584_330 Hb_010381_070--Hb_001584_330 Hb_003777_330 Hb_003777_330 Hb_000923_020--Hb_003777_330 Hb_000099_240 Hb_000099_240 Hb_000923_020--Hb_000099_240 Hb_004223_090 Hb_004223_090 Hb_000923_020--Hb_004223_090 Hb_001377_290 Hb_001377_290 Hb_000923_020--Hb_001377_290 Hb_000621_080 Hb_000621_080 Hb_000923_020--Hb_000621_080 Hb_096563_010 Hb_096563_010 Hb_001301_160--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001301_160--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_001301_160--Hb_011571_020 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_006400_040 Hb_006400_040 Hb_002027_260--Hb_006400_040 Hb_012634_010 Hb_012634_010 Hb_002027_260--Hb_012634_010 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_000483_350 Hb_000483_350 Hb_004109_200--Hb_000483_350 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_028872_140 Hb_028872_140 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.0408 48.0745 19.3745 27.9016 65.3484 84.1932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.3331 90.4958 69.1966 33.1909 11.5253

CAGE analysis