Hb_028872_140

Information

Type -
Description -
Location Contig28872: 96890-101865
Sequence    

Annotation

kegg
ID rcu:RCOM_1081730
description hypothetical protein
nr
ID XP_012085623.1
description PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
swissprot
ID Q8KN28
description 2,4-dichlorophenol 6-monooxygenase OS=Delftia acidovorans GN=tfdB PE=1 SV=3
trembl
ID A0A067JVE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17916 PE=4 SV=1
Gene Ontology
ID GO:0016491
description fad nad -binding oxidoreductase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30124: 96959-98255 , PASA_asmbl_30125: 99159-99818 , PASA_asmbl_30126: 100146-101477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_140 0.0 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
2 Hb_001454_210 0.0493934005 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
3 Hb_000398_180 0.0525330374 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
4 Hb_033642_010 0.053804935 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
5 Hb_009111_050 0.0554541226 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
6 Hb_002811_360 0.0587924846 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
7 Hb_015306_020 0.0597692195 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
8 Hb_015001_020 0.0604102261 - - PREDICTED: la-related protein 6B [Jatropha curcas]
9 Hb_001030_120 0.0618087377 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_000032_570 0.0621031965 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
11 Hb_006332_020 0.0638545317 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
12 Hb_007441_120 0.064202529 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
13 Hb_004195_160 0.0650082411 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
14 Hb_007380_070 0.0673861438 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_001377_290 0.067861686 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
16 Hb_007951_050 0.0684796472 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000062_240 0.0704719117 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
18 Hb_001671_020 0.0706672972 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
19 Hb_005062_070 0.0719700124 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
20 Hb_000554_020 0.0728168895 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]

Gene co-expression network

sample Hb_028872_140 Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_005062_070 Hb_005062_070 Hb_001454_210--Hb_005062_070 Hb_001454_210--Hb_009111_050 Hb_001454_210--Hb_002811_360 Hb_001030_120 Hb_001030_120 Hb_001454_210--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_033642_010--Hb_009111_050 Hb_002030_030 Hb_002030_030 Hb_033642_010--Hb_002030_030 Hb_001720_050 Hb_001720_050 Hb_033642_010--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_033642_010--Hb_000062_240 Hb_003777_270 Hb_003777_270 Hb_033642_010--Hb_003777_270 Hb_009111_050--Hb_001030_120 Hb_000190_140 Hb_000190_140 Hb_009111_050--Hb_000190_140 Hb_009111_050--Hb_015306_020 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_002811_360--Hb_000062_240 Hb_001301_200 Hb_001301_200 Hb_002811_360--Hb_001301_200 Hb_002890_340 Hb_002890_340 Hb_015306_020--Hb_002890_340 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_004046_010 Hb_004046_010 Hb_015306_020--Hb_004046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.23528 2.67138 1.65288 2.26224 5.42973 8.27734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.83639 6.41193 6.73625 3.54903 1.93559

CAGE analysis