Hb_001439_150

Information

Type -
Description -
Location Contig1439: 158507-164447
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12350g
description POPTRDRAFT_808949; pentatricopeptide repeat-containing family protein
nr
ID XP_012084745.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
swissprot
ID Q9LXE8
description Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1
trembl
ID A0A067JT92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19880 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11596: 157506-157849 , PASA_asmbl_11597: 158580-161847 , PASA_asmbl_11599: 162332-162425
cDNA
(Sanger)
(ID:Location)		 031_H17.ab1: 158580-161612

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
2 Hb_007951_060 0.0596195224 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_002685_140 0.0601576472 - - PREDICTED: membrin-11 [Jatropha curcas]
4 Hb_001511_020 0.0603284903 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
5 Hb_000000_080 0.0662305708 - - lipoate-protein ligase B, putative [Ricinus communis]
6 Hb_000327_120 0.0668502329 - - FGFR1 oncogene partner, putative [Ricinus communis]
7 Hb_168707_030 0.0679021582 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
8 Hb_006185_050 0.0713211626 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
9 Hb_001623_420 0.0734421837 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_001305_010 0.0750641232 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
11 Hb_005503_030 0.0762766198 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
12 Hb_000666_110 0.0764468928 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
13 Hb_000710_020 0.0767159441 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
14 Hb_007576_040 0.077501089 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
15 Hb_000046_300 0.0812056426 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
16 Hb_002784_050 0.0814588803 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
17 Hb_000392_300 0.0819736898 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
18 Hb_001301_160 0.0826634568 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
19 Hb_000120_950 0.0827537918 - - PREDICTED: protein GRIP [Jatropha curcas]
20 Hb_000089_220 0.0831774083 - - PREDICTED: protein FAM133-like [Populus euphratica]

Gene co-expression network

sample Hb_001439_150 Hb_001439_150 Hb_007951_060 Hb_007951_060 Hb_001439_150--Hb_007951_060 Hb_002685_140 Hb_002685_140 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030 Hb_001305_010 Hb_001305_010 Hb_007951_060--Hb_001305_010 Hb_007951_060--Hb_000327_120 Hb_000926_280 Hb_000926_280 Hb_007951_060--Hb_000926_280 Hb_003417_020 Hb_003417_020 Hb_007951_060--Hb_003417_020 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040 Hb_002685_140--Hb_000327_120 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_002685_140--Hb_007576_040 Hb_001301_160 Hb_001301_160 Hb_001511_020--Hb_001301_160 Hb_000162_090 Hb_000162_090 Hb_001511_020--Hb_000162_090 Hb_001511_020--Hb_001623_420 Hb_003642_060 Hb_003642_060 Hb_001511_020--Hb_003642_060 Hb_001511_020--Hb_002685_140 Hb_006065_020 Hb_006065_020 Hb_000000_080--Hb_006065_020 Hb_000000_080--Hb_168707_030 Hb_000030_010 Hb_000030_010 Hb_000000_080--Hb_000030_010 Hb_000017_120 Hb_000017_120 Hb_000000_080--Hb_000017_120 Hb_000000_080--Hb_007951_060 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_000057_040 Hb_000057_040 Hb_168707_030--Hb_000057_040 Hb_168707_030--Hb_003642_060 Hb_001006_170 Hb_001006_170 Hb_168707_030--Hb_001006_170 Hb_004195_160 Hb_004195_160 Hb_168707_030--Hb_004195_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.5892 13.6676 19.277 11.475 31.8216 29.8716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4372 26.377 29.4928 9.94332 6.2475

CAGE analysis