Hb_000017_120

Information

Type -
Description -
Location Contig17: 175014-178595
Sequence    

Annotation

kegg
ID rcu:RCOM_0300840
description pin2-interacting protein x1, putative
nr
ID XP_012086819.1
description PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20537 PE=4 SV=1
Gene Ontology
ID GO:0003676
description pin2 terf1-interacting telomerase inhibitor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15820: 175033-178560 , PASA_asmbl_15821: 175087-178554 , PASA_asmbl_15823: 177225-177517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_120 0.0 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
2 Hb_001006_170 0.0614924142 - - Endonuclease V, putative [Ricinus communis]
3 Hb_001030_120 0.0623951005 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_012340_030 0.0630366385 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
5 Hb_004223_130 0.0647227748 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002631_050 0.0666523344 - - membrane associated ring finger 1,8, putative [Ricinus communis]
7 Hb_002272_250 0.0688987148 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_168707_030 0.0717795973 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
9 Hb_000107_390 0.0726559753 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
10 Hb_168918_020 0.0742099273 - - pectin acetylesterase, putative [Ricinus communis]
11 Hb_000001_020 0.0754731914 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000417_180 0.0757245979 - - 60S ribosomal protein L11, putative [Ricinus communis]
13 Hb_003609_040 0.0768623596 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
14 Hb_005527_050 0.0772190326 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
15 Hb_003642_060 0.0778921554 - - hypothetical protein RCOM_1189860 [Ricinus communis]
16 Hb_000000_080 0.0783431373 - - lipoate-protein ligase B, putative [Ricinus communis]
17 Hb_028639_060 0.0794606237 - - transporter, putative [Ricinus communis]
18 Hb_003728_020 0.0810422934 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004195_160 0.081378316 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
20 Hb_001135_160 0.0816189914 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000017_120 Hb_000017_120 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_002272_250 Hb_002272_250 Hb_000017_120--Hb_002272_250 Hb_168707_030 Hb_168707_030 Hb_001006_170--Hb_168707_030 Hb_005503_030 Hb_005503_030 Hb_001006_170--Hb_005503_030 Hb_033843_010 Hb_033843_010 Hb_001006_170--Hb_033843_010 Hb_002149_020 Hb_002149_020 Hb_001006_170--Hb_002149_020 Hb_000000_080 Hb_000000_080 Hb_001006_170--Hb_000000_080 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_168918_020 Hb_168918_020 Hb_012340_030--Hb_168918_020 Hb_001823_100 Hb_001823_100 Hb_012340_030--Hb_001823_100 Hb_000107_390 Hb_000107_390 Hb_012340_030--Hb_000107_390 Hb_012340_030--Hb_002272_250 Hb_118419_020 Hb_118419_020 Hb_012340_030--Hb_118419_020 Hb_158092_070 Hb_158092_070 Hb_004223_130--Hb_158092_070 Hb_001671_080 Hb_001671_080 Hb_004223_130--Hb_001671_080 Hb_133271_020 Hb_133271_020 Hb_004223_130--Hb_133271_020 Hb_004223_130--Hb_001030_120 Hb_004223_130--Hb_002272_250 Hb_185467_020 Hb_185467_020 Hb_002631_050--Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_002631_050--Hb_008453_150 Hb_000340_510 Hb_000340_510 Hb_002631_050--Hb_000340_510 Hb_000733_060 Hb_000733_060 Hb_002631_050--Hb_000733_060 Hb_022256_040 Hb_022256_040 Hb_002631_050--Hb_022256_040 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_011794_090 Hb_011794_090 Hb_002272_250--Hb_011794_090 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_150069_020 Hb_150069_020 Hb_002272_250--Hb_150069_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.507 30.9479 36.6643 33.0299 141.349 144.771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.326 106.43 120.569 49.1954 19.3119

CAGE analysis