Hb_011794_090

Information

Type -
Description -
Location Contig11794: 59620-61514
Sequence    

Annotation

kegg
ID rcu:RCOM_1615140
description hypothetical protein
nr
ID XP_012083407.1
description PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14408 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05408: 59706-61390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011794_090 0.0 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
2 Hb_003688_100 0.0596151845 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
3 Hb_004204_070 0.067997279 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
4 Hb_002272_250 0.0685081442 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000107_050 0.0714709062 - - 60S ribosomal protein L9, putative [Ricinus communis]
6 Hb_004722_060 0.0819858962 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
7 Hb_000977_130 0.0826969281 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
8 Hb_000666_110 0.0833718936 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
9 Hb_000107_390 0.0842737386 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
10 Hb_000141_060 0.0844789886 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
11 Hb_005489_130 0.0845398264 - - calmodulin, putative [Ricinus communis]
12 Hb_000690_080 0.0850149225 transcription factor TF Family: HB -
13 Hb_019962_030 0.0870657807 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
14 Hb_003392_040 0.0872256046 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
15 Hb_011537_010 0.0877565986 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
16 Hb_012340_030 0.0892304091 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
17 Hb_000494_020 0.0892887987 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
18 Hb_001741_140 0.0908509361 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
19 Hb_000500_130 0.0910138358 - - small GTPase [Hevea brasiliensis]
20 Hb_000000_160 0.0910911732 - - PREDICTED: membrin-11 [Jatropha curcas]

Gene co-expression network

sample Hb_011794_090 Hb_011794_090 Hb_003688_100 Hb_003688_100 Hb_011794_090--Hb_003688_100 Hb_004204_070 Hb_004204_070 Hb_011794_090--Hb_004204_070 Hb_002272_250 Hb_002272_250 Hb_011794_090--Hb_002272_250 Hb_000107_050 Hb_000107_050 Hb_011794_090--Hb_000107_050 Hb_004722_060 Hb_004722_060 Hb_011794_090--Hb_004722_060 Hb_000977_130 Hb_000977_130 Hb_011794_090--Hb_000977_130 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_003688_100--Hb_004722_060 Hb_010449_020 Hb_010449_020 Hb_003688_100--Hb_010449_020 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_005489_130 Hb_005489_130 Hb_003688_100--Hb_005489_130 Hb_004204_070--Hb_002272_250 Hb_004994_170 Hb_004994_170 Hb_004204_070--Hb_004994_170 Hb_000141_060 Hb_000141_060 Hb_004204_070--Hb_000141_060 Hb_010661_030 Hb_010661_030 Hb_004204_070--Hb_010661_030 Hb_001404_100 Hb_001404_100 Hb_004204_070--Hb_001404_100 Hb_000032_570 Hb_000032_570 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_000017_120 Hb_000017_120 Hb_002272_250--Hb_000017_120 Hb_150069_020 Hb_150069_020 Hb_002272_250--Hb_150069_020 Hb_000933_180 Hb_000933_180 Hb_000107_050--Hb_000933_180 Hb_010128_130 Hb_010128_130 Hb_000107_050--Hb_010128_130 Hb_001741_140 Hb_001741_140 Hb_000107_050--Hb_001741_140 Hb_000494_020 Hb_000494_020 Hb_000107_050--Hb_000494_020 Hb_000690_080 Hb_000690_080 Hb_000107_050--Hb_000690_080 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080 Hb_002997_170 Hb_002997_170 Hb_000977_130--Hb_002997_170 Hb_000977_130--Hb_000690_080 Hb_000977_130--Hb_001741_140 Hb_009767_120 Hb_009767_120 Hb_000977_130--Hb_009767_120 Hb_000977_130--Hb_000107_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.8364 13.8512 20.7736 15.2529 45.4127 50.8091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.8033 48.4109 29.6536 16.9616 3.7721

CAGE analysis