Hb_004204_070

Information

Type -
Description -
Location Contig4204: 41194-43100
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06660g
description hypothetical protein
nr
ID XP_012080358.1
description PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
swissprot
ID Q9FNP8
description 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1
trembl
ID A0A067K8J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11699 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s19-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41522: 41216-43246
cDNA
(Sanger)
(ID:Location)		 009_C10.ab1: 41216-43111 , 015_F09.ab1: 41216-43178 , 017_B17.ab1: 41315-42218 , 019_E11.ab1: 41224-43157 , 051_B11.ab1: 41251-42560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_070 0.0 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
2 Hb_011794_090 0.067997279 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
3 Hb_002272_250 0.0732250356 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_004994_170 0.0825437147 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
5 Hb_000141_060 0.0865003634 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
6 Hb_010661_030 0.0880015539 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
7 Hb_001404_100 0.0893216272 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
8 Hb_004722_060 0.0907342944 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
9 Hb_000573_070 0.0910504403 - - hypothetical protein JCGZ_14808 [Jatropha curcas]
10 Hb_003688_100 0.0912625529 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
11 Hb_000107_390 0.0922655026 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
12 Hb_000666_110 0.0931058432 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
13 Hb_000000_080 0.0939162431 - - lipoate-protein ligase B, putative [Ricinus communis]
14 Hb_019962_030 0.0949977142 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
15 Hb_000139_410 0.098202673 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
16 Hb_000576_010 0.099797108 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
17 Hb_001405_050 0.1004273715 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
18 Hb_000107_050 0.1008559651 - - 60S ribosomal protein L9, putative [Ricinus communis]
19 Hb_000023_230 0.1022017284 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
20 Hb_000538_020 0.102303771 - - PREDICTED: autophagy protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_004204_070 Hb_004204_070 Hb_011794_090 Hb_011794_090 Hb_004204_070--Hb_011794_090 Hb_002272_250 Hb_002272_250 Hb_004204_070--Hb_002272_250 Hb_004994_170 Hb_004994_170 Hb_004204_070--Hb_004994_170 Hb_000141_060 Hb_000141_060 Hb_004204_070--Hb_000141_060 Hb_010661_030 Hb_010661_030 Hb_004204_070--Hb_010661_030 Hb_001404_100 Hb_001404_100 Hb_004204_070--Hb_001404_100 Hb_003688_100 Hb_003688_100 Hb_011794_090--Hb_003688_100 Hb_011794_090--Hb_002272_250 Hb_000107_050 Hb_000107_050 Hb_011794_090--Hb_000107_050 Hb_004722_060 Hb_004722_060 Hb_011794_090--Hb_004722_060 Hb_000977_130 Hb_000977_130 Hb_011794_090--Hb_000977_130 Hb_000032_570 Hb_000032_570 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_000017_120 Hb_000017_120 Hb_002272_250--Hb_000017_120 Hb_150069_020 Hb_150069_020 Hb_002272_250--Hb_150069_020 Hb_000317_030 Hb_000317_030 Hb_004994_170--Hb_000317_030 Hb_004994_170--Hb_001404_100 Hb_000576_010 Hb_000576_010 Hb_004994_170--Hb_000576_010 Hb_001135_050 Hb_001135_050 Hb_004994_170--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_004994_170--Hb_001246_090 Hb_000666_110 Hb_000666_110 Hb_000141_060--Hb_000666_110 Hb_143629_010 Hb_143629_010 Hb_000141_060--Hb_143629_010 Hb_019962_030 Hb_019962_030 Hb_000141_060--Hb_019962_030 Hb_171900_100 Hb_171900_100 Hb_000141_060--Hb_171900_100 Hb_000141_060--Hb_011794_090 Hb_143766_090 Hb_143766_090 Hb_000141_060--Hb_143766_090 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_005993_040 Hb_005993_040 Hb_001404_100--Hb_005993_040 Hb_000771_120 Hb_000771_120 Hb_001404_100--Hb_000771_120 Hb_001404_100--Hb_002233_150 Hb_002043_190 Hb_002043_190 Hb_001404_100--Hb_002043_190 Hb_004491_010 Hb_004491_010 Hb_001404_100--Hb_004491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
823.269 188.763 305.346 106.848 494.164 472.578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
549.891 588.126 419.46 235.066 52.3684

CAGE analysis