Hb_003688_100

Information

Type -
Description -
Location Contig3688: 61174-61635
Sequence    

Annotation

kegg
ID tcc:TCM_002515
description hypothetical protein
nr
ID XP_007049470.1
description Uncharacterized protein TCM_002515 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DMI5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_002515 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37970: 55620-60411 , PASA_asmbl_37973: 61218-61463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_100 0.0 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
2 Hb_011794_090 0.0596151845 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
3 Hb_001514_020 0.0620658293 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
4 Hb_004722_060 0.0709952246 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
5 Hb_010449_020 0.0751425701 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
6 Hb_011537_010 0.0783884409 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
7 Hb_005489_130 0.0787881438 - - calmodulin, putative [Ricinus communis]
8 Hb_143766_090 0.079578164 - - 60S ribosomal protein L31B [Hevea brasiliensis]
9 Hb_000768_050 0.0797451912 - - hypothetical protein RCOM_0845740 [Ricinus communis]
10 Hb_002272_250 0.0816970995 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000265_150 0.0849350078 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
12 Hb_134226_010 0.0862715172 - - 40S ribosomal protein S21e, putative [Ricinus communis]
13 Hb_007441_340 0.0864300016 - - protein with unknown function [Ricinus communis]
14 Hb_000538_020 0.0876913473 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
15 Hb_001269_150 0.0887798698 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
16 Hb_000107_390 0.0889755309 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
17 Hb_000847_070 0.0890615143 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
18 Hb_004204_030 0.090307496 - - unknown [Populus trichocarpa]
19 Hb_004204_070 0.0912625529 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
20 Hb_005527_050 0.0915166874 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]

Gene co-expression network

sample Hb_003688_100 Hb_003688_100 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_004722_060 Hb_004722_060 Hb_003688_100--Hb_004722_060 Hb_010449_020 Hb_010449_020 Hb_003688_100--Hb_010449_020 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_005489_130 Hb_005489_130 Hb_003688_100--Hb_005489_130 Hb_004204_070 Hb_004204_070 Hb_011794_090--Hb_004204_070 Hb_002272_250 Hb_002272_250 Hb_011794_090--Hb_002272_250 Hb_000107_050 Hb_000107_050 Hb_011794_090--Hb_000107_050 Hb_011794_090--Hb_004722_060 Hb_000977_130 Hb_000977_130 Hb_011794_090--Hb_000977_130 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_004502_030 Hb_004502_030 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080 Hb_003185_020 Hb_003185_020 Hb_010449_020--Hb_003185_020 Hb_000392_270 Hb_000392_270 Hb_010449_020--Hb_000392_270 Hb_000768_050 Hb_000768_050 Hb_010449_020--Hb_000768_050 Hb_010449_020--Hb_005489_130 Hb_010449_020--Hb_004722_060 Hb_011537_010--Hb_000392_270 Hb_011537_010--Hb_005489_130 Hb_000045_130 Hb_000045_130 Hb_011537_010--Hb_000045_130 Hb_011537_010--Hb_011794_090 Hb_003551_020 Hb_003551_020 Hb_011537_010--Hb_003551_020 Hb_005489_130--Hb_000045_130 Hb_005489_130--Hb_004722_060 Hb_000808_040 Hb_000808_040 Hb_005489_130--Hb_000808_040 Hb_159558_030 Hb_159558_030 Hb_005489_130--Hb_159558_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.7172 9.30238 9.93184 6.68174 33.9303 29.4983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.9636 30.2287 15.6381 9.44048 1.5464

CAGE analysis