Hb_005489_130

Information

Type -
Description -
Location Contig5489: 101450-101893
Sequence    

Annotation

kegg
ID rcu:RCOM_1680020
description calmodulin, putative (EC:1.3.1.74)
nr
ID XP_002509602.1
description calmodulin, putative [Ricinus communis]
swissprot
ID Q94AZ4
description Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=2 SV=1
trembl
ID B9RBR8
description Calmodulin, putative OS=Ricinus communis GN=RCOM_1680020 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 014_D14.ab1: 101450-102077

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_130 0.0 - - calmodulin, putative [Ricinus communis]
2 Hb_000045_130 0.0752908529 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
3 Hb_010449_020 0.0767148902 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
4 Hb_003688_100 0.0787881438 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
5 Hb_004722_060 0.0794745484 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
6 Hb_000808_040 0.0797625038 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
7 Hb_159558_030 0.0805161739 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
8 Hb_011794_090 0.0845398264 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
9 Hb_002495_070 0.0846431983 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
10 Hb_011537_010 0.0852698095 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
11 Hb_000768_050 0.0864174608 - - hypothetical protein RCOM_0845740 [Ricinus communis]
12 Hb_000265_150 0.0874774988 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
13 Hb_002762_060 0.0889710902 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
14 Hb_086639_070 0.0890689669 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
15 Hb_001369_650 0.0909219287 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
16 Hb_009767_120 0.090938641 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
17 Hb_003551_020 0.0913932708 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
18 Hb_000000_160 0.0918630654 - - PREDICTED: membrin-11 [Jatropha curcas]
19 Hb_000392_270 0.091917195 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
20 Hb_000500_130 0.0929878733 - - small GTPase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005489_130 Hb_005489_130 Hb_000045_130 Hb_000045_130 Hb_005489_130--Hb_000045_130 Hb_010449_020 Hb_010449_020 Hb_005489_130--Hb_010449_020 Hb_003688_100 Hb_003688_100 Hb_005489_130--Hb_003688_100 Hb_004722_060 Hb_004722_060 Hb_005489_130--Hb_004722_060 Hb_000808_040 Hb_000808_040 Hb_005489_130--Hb_000808_040 Hb_159558_030 Hb_159558_030 Hb_005489_130--Hb_159558_030 Hb_000977_080 Hb_000977_080 Hb_000045_130--Hb_000977_080 Hb_003551_020 Hb_003551_020 Hb_000045_130--Hb_003551_020 Hb_001369_650 Hb_001369_650 Hb_000045_130--Hb_001369_650 Hb_000392_270 Hb_000392_270 Hb_000045_130--Hb_000392_270 Hb_000019_230 Hb_000019_230 Hb_000045_130--Hb_000019_230 Hb_003185_020 Hb_003185_020 Hb_010449_020--Hb_003185_020 Hb_010449_020--Hb_000392_270 Hb_000768_050 Hb_000768_050 Hb_010449_020--Hb_000768_050 Hb_010449_020--Hb_003688_100 Hb_010449_020--Hb_004722_060 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_003688_100--Hb_004722_060 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_015941_030 Hb_015941_030 Hb_000808_040--Hb_015941_030 Hb_086639_070 Hb_086639_070 Hb_000808_040--Hb_086639_070 Hb_008406_160 Hb_008406_160 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180 Hb_000500_130 Hb_000500_130 Hb_159558_030--Hb_000500_130 Hb_002400_220 Hb_002400_220 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_006569_020 Hb_006569_020 Hb_159558_030--Hb_006569_020 Hb_158092_070 Hb_158092_070 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
971.631 363.456 199.817 247.479 727.666 913.978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
818.885 863.077 372.45 193.145 62.3279

CAGE analysis