Hb_086639_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig86639: 40456-45449
Sequence    

Annotation

kegg
ID rcu:RCOM_0791090
description Transcription factor BIM1, putative
nr
ID XP_012088108.1
description PREDICTED: transcription factor BIM2 [Jatropha curcas]
swissprot
ID Q9CAA4
description Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1
trembl
ID A0A067JKC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25623 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bim2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61015: 40805-45513
cDNA
(Sanger)
(ID:Location)		 026_M10.ab1: 43353-45415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086639_070 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
2 Hb_000661_250 0.0687191784 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
3 Hb_000808_040 0.0709540456 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
4 Hb_000000_160 0.0754262298 - - PREDICTED: membrin-11 [Jatropha curcas]
5 Hb_070739_010 0.0766004655 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
6 Hb_001259_090 0.0767458806 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
7 Hb_007919_060 0.0769343079 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
8 Hb_000621_080 0.0781024388 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000462_140 0.081098063 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
10 Hb_000923_020 0.0837621533 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
11 Hb_000092_100 0.0844891814 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
12 Hb_001610_110 0.0846129263 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
13 Hb_000109_160 0.084802503 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
14 Hb_001301_160 0.0856609536 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
15 Hb_005928_110 0.0861100458 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
16 Hb_004109_200 0.0864482016 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
17 Hb_096563_010 0.0889380115 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
18 Hb_012799_110 0.0890147809 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
19 Hb_005489_130 0.0890689669 - - calmodulin, putative [Ricinus communis]
20 Hb_002495_070 0.0896989051 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]

Gene co-expression network

sample Hb_086639_070 Hb_086639_070 Hb_000661_250 Hb_000661_250 Hb_086639_070--Hb_000661_250 Hb_000808_040 Hb_000808_040 Hb_086639_070--Hb_000808_040 Hb_000000_160 Hb_000000_160 Hb_086639_070--Hb_000000_160 Hb_070739_010 Hb_070739_010 Hb_086639_070--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_086639_070--Hb_001259_090 Hb_007919_060 Hb_007919_060 Hb_086639_070--Hb_007919_060 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_000808_040--Hb_070739_010 Hb_015941_030 Hb_015941_030 Hb_000808_040--Hb_015941_030 Hb_008406_160 Hb_008406_160 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180 Hb_000000_160--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000000_160--Hb_023226_040 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040 Hb_070739_010--Hb_000462_140 Hb_070739_010--Hb_007919_060 Hb_002495_040 Hb_002495_040 Hb_070739_010--Hb_002495_040 Hb_000092_100 Hb_000092_100 Hb_070739_010--Hb_000092_100 Hb_000866_270 Hb_000866_270 Hb_001259_090--Hb_000866_270 Hb_001259_090--Hb_096563_010 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_022250_030 Hb_022250_030 Hb_007919_060--Hb_022250_030 Hb_007919_060--Hb_001635_170 Hb_000699_130 Hb_000699_130 Hb_007919_060--Hb_000699_130 Hb_007919_060--Hb_000000_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.3414 35.7012 17.2842 17.3438 42.0554 56.273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.1398 53.919 25.0575 15.4933 10.775

CAGE analysis