Hb_000808_040

Information

Type -
Description -
Location Contig808: 34645-42298
Sequence    

Annotation

kegg
ID rcu:RCOM_1434340
description hypothetical protein
nr
ID XP_012088946.1
description PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
swissprot
ID Q84J70
description Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1
trembl
ID A0A067JHS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23255 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59073: 36258-36695 , PASA_asmbl_59076: 40817-42279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_040 0.0 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
2 Hb_070739_010 0.0670114393 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
3 Hb_015941_030 0.0680239399 - - unknown [Populus trichocarpa]
4 Hb_086639_070 0.0709540456 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
5 Hb_008406_160 0.0758900834 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
6 Hb_000465_430 0.0762410168 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
7 Hb_003994_180 0.0764401948 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
8 Hb_005489_130 0.0797625038 - - calmodulin, putative [Ricinus communis]
9 Hb_001009_040 0.0799373006 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
10 Hb_001124_210 0.0807327132 - - conserved hypothetical protein [Ricinus communis]
11 Hb_159558_030 0.0814388728 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
12 Hb_002475_160 0.0816438719 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
13 Hb_002232_170 0.0827615158 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
14 Hb_001158_220 0.0832466425 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
15 Hb_015978_060 0.0841947594 - - unnamed protein product [Vitis vinifera]
16 Hb_000661_250 0.0847684015 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
17 Hb_000169_010 0.0863182101 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
18 Hb_002400_220 0.087777873 - - Vesicle-associated membrane protein, putative [Ricinus communis]
19 Hb_003392_040 0.0877860256 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
20 Hb_029584_080 0.0880681256 - - serine acetyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000808_040 Hb_000808_040 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_015941_030 Hb_015941_030 Hb_000808_040--Hb_015941_030 Hb_086639_070 Hb_086639_070 Hb_000808_040--Hb_086639_070 Hb_008406_160 Hb_008406_160 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180 Hb_000462_140 Hb_000462_140 Hb_070739_010--Hb_000462_140 Hb_070739_010--Hb_086639_070 Hb_007919_060 Hb_007919_060 Hb_070739_010--Hb_007919_060 Hb_002495_040 Hb_002495_040 Hb_070739_010--Hb_002495_040 Hb_000092_100 Hb_000092_100 Hb_070739_010--Hb_000092_100 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_002232_170 Hb_002232_170 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_000661_250 Hb_000661_250 Hb_086639_070--Hb_000661_250 Hb_000000_160 Hb_000000_160 Hb_086639_070--Hb_000000_160 Hb_001259_090 Hb_001259_090 Hb_086639_070--Hb_001259_090 Hb_086639_070--Hb_007919_060 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050 Hb_012092_010 Hb_012092_010 Hb_000465_430--Hb_012092_010 Hb_000465_430--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_005016_170 Hb_005016_170 Hb_000465_430--Hb_005016_170 Hb_000465_430--Hb_000092_100 Hb_023226_040 Hb_023226_040 Hb_003994_180--Hb_023226_040 Hb_001195_690 Hb_001195_690 Hb_003994_180--Hb_001195_690 Hb_004324_310 Hb_004324_310 Hb_003994_180--Hb_004324_310 Hb_001138_050 Hb_001138_050 Hb_003994_180--Hb_001138_050 Hb_159558_030 Hb_159558_030 Hb_003994_180--Hb_159558_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.3373 34.7979 20.0475 30.8995 71.236 85.3407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.6676 68.246 33.6517 21.9637 15.0016

CAGE analysis