Hb_000997_060

Information

Type -
Description -
Location Contig997: 74874-77453
Sequence    

Annotation

kegg
ID rcu:RCOM_0908820
description DNA-repair protein XRCC4, putative
nr
ID XP_012075784.1
description PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
swissprot
ID Q682V0
description DNA repair protein XRCC4 OS=Arabidopsis thaliana GN=XRCC4 PE=1 SV=2
trembl
ID A0A067KSL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11186 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna repair protein xrcc4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64846: 74918-77357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_060 0.0 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
2 Hb_000258_410 0.0719297734 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
3 Hb_002232_170 0.0763572437 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
4 Hb_008406_160 0.0766393222 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
5 Hb_015941_030 0.0814391138 - - unknown [Populus trichocarpa]
6 Hb_123475_010 0.0824985031 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
7 Hb_000272_100 0.0848492205 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
8 Hb_003911_040 0.0854962452 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
9 Hb_000012_090 0.0855938244 - - 3'-5' exonuclease, putative [Ricinus communis]
10 Hb_061908_010 0.0862696869 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
11 Hb_007101_100 0.0891313679 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
12 Hb_001009_040 0.0894651381 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
13 Hb_003086_110 0.0906471641 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
14 Hb_000169_010 0.0944195455 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
15 Hb_001124_210 0.0955702421 - - conserved hypothetical protein [Ricinus communis]
16 Hb_027892_060 0.0960020086 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
17 Hb_002400_220 0.0970717272 - - Vesicle-associated membrane protein, putative [Ricinus communis]
18 Hb_033491_010 0.0971521663 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
19 Hb_007632_250 0.0972608559 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000808_040 0.0976761766 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000997_060 Hb_000997_060 Hb_000258_410 Hb_000258_410 Hb_000997_060--Hb_000258_410 Hb_002232_170 Hb_002232_170 Hb_000997_060--Hb_002232_170 Hb_008406_160 Hb_008406_160 Hb_000997_060--Hb_008406_160 Hb_015941_030 Hb_015941_030 Hb_000997_060--Hb_015941_030 Hb_123475_010 Hb_123475_010 Hb_000997_060--Hb_123475_010 Hb_000272_100 Hb_000272_100 Hb_000997_060--Hb_000272_100 Hb_000258_410--Hb_008406_160 Hb_000237_230 Hb_000237_230 Hb_000258_410--Hb_000237_230 Hb_005271_070 Hb_005271_070 Hb_000258_410--Hb_005271_070 Hb_011537_040 Hb_011537_040 Hb_000258_410--Hb_011537_040 Hb_000176_110 Hb_000176_110 Hb_000258_410--Hb_000176_110 Hb_007101_100 Hb_007101_100 Hb_002232_170--Hb_007101_100 Hb_002232_170--Hb_015941_030 Hb_000169_010 Hb_000169_010 Hb_002232_170--Hb_000169_010 Hb_002374_160 Hb_002374_160 Hb_002232_170--Hb_002374_160 Hb_000808_040 Hb_000808_040 Hb_002232_170--Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_008406_160--Hb_015941_030 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_015941_030--Hb_000808_040 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_061908_010 Hb_061908_010 Hb_123475_010--Hb_061908_010 Hb_123475_010--Hb_000169_010 Hb_001124_210 Hb_001124_210 Hb_123475_010--Hb_001124_210 Hb_185830_020 Hb_185830_020 Hb_123475_010--Hb_185830_020 Hb_004223_090 Hb_004223_090 Hb_123475_010--Hb_004223_090 Hb_000956_030 Hb_000956_030 Hb_123475_010--Hb_000956_030 Hb_033491_010 Hb_033491_010 Hb_000272_100--Hb_033491_010 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_000732_260 Hb_000732_260 Hb_000272_100--Hb_000732_260 Hb_003086_110 Hb_003086_110 Hb_000272_100--Hb_003086_110 Hb_003086_020 Hb_003086_020 Hb_000272_100--Hb_003086_020 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.3302 18.4571 6.86806 15.7745 59.7967 80.0241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.7263 43.8412 22.0649 22.2933 8.10122

CAGE analysis