Hb_002232_170

Information

Type -
Description -
Location Contig2232: 121832-124717
Sequence    

Annotation

kegg
ID rcu:RCOM_1381610
description hypothetical protein
nr
ID XP_012074528.1
description PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09879 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein fam133-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23112: 121385-122066 , PASA_asmbl_23113: 123851-124099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_170 0.0 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
2 Hb_007101_100 0.0750619881 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
3 Hb_015941_030 0.0753009861 - - unknown [Populus trichocarpa]
4 Hb_000997_060 0.0763572437 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
5 Hb_000169_010 0.0796621551 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_002374_160 0.0808833351 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
7 Hb_000808_040 0.0827615158 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
8 Hb_123475_010 0.0843296789 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
9 Hb_007317_190 0.0876276701 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
10 Hb_003728_030 0.088227967 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
11 Hb_005539_030 0.0896610911 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_029584_080 0.0904451765 - - serine acetyltransferase [Hevea brasiliensis]
13 Hb_001009_040 0.0922211735 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
14 Hb_061908_010 0.0926380542 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
15 Hb_001124_210 0.0928860486 - - conserved hypothetical protein [Ricinus communis]
16 Hb_185830_020 0.0933792322 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_002475_160 0.0938095947 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
18 Hb_004223_090 0.0951451822 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
19 Hb_004221_010 0.095443855 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
20 Hb_000522_090 0.0959971505 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_002232_170 Hb_002232_170 Hb_007101_100 Hb_007101_100 Hb_002232_170--Hb_007101_100 Hb_015941_030 Hb_015941_030 Hb_002232_170--Hb_015941_030 Hb_000997_060 Hb_000997_060 Hb_002232_170--Hb_000997_060 Hb_000169_010 Hb_000169_010 Hb_002232_170--Hb_000169_010 Hb_002374_160 Hb_002374_160 Hb_002232_170--Hb_002374_160 Hb_000808_040 Hb_000808_040 Hb_002232_170--Hb_000808_040 Hb_005063_040 Hb_005063_040 Hb_007101_100--Hb_005063_040 Hb_004374_200 Hb_004374_200 Hb_007101_100--Hb_004374_200 Hb_001454_140 Hb_001454_140 Hb_007101_100--Hb_001454_140 Hb_007101_100--Hb_002374_160 Hb_000963_190 Hb_000963_190 Hb_007101_100--Hb_000963_190 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_015941_030--Hb_000808_040 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_000258_410 Hb_000258_410 Hb_000997_060--Hb_000258_410 Hb_000997_060--Hb_008406_160 Hb_000997_060--Hb_015941_030 Hb_123475_010 Hb_123475_010 Hb_000997_060--Hb_123475_010 Hb_000272_100 Hb_000272_100 Hb_000997_060--Hb_000272_100 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_000169_010--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_004128_190 Hb_004128_190 Hb_002374_160--Hb_004128_190 Hb_000245_130 Hb_000245_130 Hb_002374_160--Hb_000245_130 Hb_000398_180 Hb_000398_180 Hb_002374_160--Hb_000398_180 Hb_002374_160--Hb_001454_140 Hb_002374_160--Hb_000720_120 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_086639_070 Hb_086639_070 Hb_000808_040--Hb_086639_070 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0636 11.5018 3.91218 7.16653 19.6219 30.8316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0133 17.8216 9.9915 11.1853 5.70316

CAGE analysis