Hb_000963_190

Information

Type -
Description -
Location Contig963: 161870-167160
Sequence    

Annotation

kegg
ID rcu:RCOM_0155140
description Glutamine amidotransferase subunit pdxT, putative
nr
ID XP_002530293.1
description Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
swissprot
ID Q8LAD0
description Probable pyridoxal 5'-phosphate synthase subunit PDX2 OS=Arabidopsis thaliana GN=PDX2 PE=1 SV=1
trembl
ID B9SWC4
description Glutamine amidotransferase subunit pdxT, putative OS=Ricinus communis GN=RCOM_0155140 PE=3 SV=1
Gene Ontology
ID GO:0004359
description pyridoxal biosynthesis protein pdx2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63833: 161722-161804 , PASA_asmbl_63834: 161812-166972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_190 0.0 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
2 Hb_007101_100 0.0856031539 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
3 Hb_000676_290 0.087999067 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
4 Hb_001235_070 0.0908713831 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007193_100 0.0916699517 - - syntaxin family protein [Populus trichocarpa]
6 Hb_001454_140 0.093085495 - - protein arginine n-methyltransferase, putative [Ricinus communis]
7 Hb_071130_030 0.0932727892 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
8 Hb_015057_010 0.0936765748 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
9 Hb_000175_070 0.0969274638 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
10 Hb_004055_140 0.1007615081 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_011671_220 0.1020067205 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001369_050 0.1058320309 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
13 Hb_006788_070 0.1061278445 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
14 Hb_002616_050 0.1068524365 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
15 Hb_000317_430 0.1075262324 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
16 Hb_005063_040 0.1077418252 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
17 Hb_009558_020 0.1082659124 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
18 Hb_004453_150 0.1085705614 - - BnaC02g13240D [Brassica napus]
19 Hb_000230_540 0.1085808567 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
20 Hb_000015_210 0.1088356361 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]

Gene co-expression network

sample Hb_000963_190 Hb_000963_190 Hb_007101_100 Hb_007101_100 Hb_000963_190--Hb_007101_100 Hb_000676_290 Hb_000676_290 Hb_000963_190--Hb_000676_290 Hb_001235_070 Hb_001235_070 Hb_000963_190--Hb_001235_070 Hb_007193_100 Hb_007193_100 Hb_000963_190--Hb_007193_100 Hb_001454_140 Hb_001454_140 Hb_000963_190--Hb_001454_140 Hb_071130_030 Hb_071130_030 Hb_000963_190--Hb_071130_030 Hb_005063_040 Hb_005063_040 Hb_007101_100--Hb_005063_040 Hb_004374_200 Hb_004374_200 Hb_007101_100--Hb_004374_200 Hb_007101_100--Hb_001454_140 Hb_002232_170 Hb_002232_170 Hb_007101_100--Hb_002232_170 Hb_002374_160 Hb_002374_160 Hb_007101_100--Hb_002374_160 Hb_000024_080 Hb_000024_080 Hb_000676_290--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_000676_290--Hb_000087_020 Hb_005398_030 Hb_005398_030 Hb_000676_290--Hb_005398_030 Hb_010180_020 Hb_010180_020 Hb_000676_290--Hb_010180_020 Hb_000676_290--Hb_071130_030 Hb_002112_040 Hb_002112_040 Hb_000676_290--Hb_002112_040 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001369_050 Hb_001369_050 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_000175_070 Hb_000175_070 Hb_007193_100--Hb_000175_070 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_000317_430 Hb_000317_430 Hb_007193_100--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_007193_100--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_001454_140--Hb_002374_160 Hb_071130_030--Hb_005398_030 Hb_117134_010 Hb_117134_010 Hb_071130_030--Hb_117134_010 Hb_071130_030--Hb_001235_070 Hb_002685_190 Hb_002685_190 Hb_071130_030--Hb_002685_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.3613 9.66662 8.1778 10.9278 31.4926 77.0187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.3709 47.4808 35.8975 11.7659 17.9312

CAGE analysis