Hb_005686_110

Information

Type -
Description -
Location Contig5686: 85879-87942
Sequence    

Annotation

kegg
ID cic:CICLE_v10012944mg
description hypothetical protein
nr
ID XP_011006971.1
description PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
swissprot
ID Q9FFE0
description Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana GN=At5g16450 PE=1 SV=1
trembl
ID V4SME9
description 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Citrus clementina GN=CICLE_v10012944mg PE=3 SV=1
Gene Ontology
ID GO:0008168
description 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49206: 85873-88049 , PASA_asmbl_49208: 87527-87741 , PASA_asmbl_49209: 88919-89223
cDNA
(Sanger)
(ID:Location)		 023_O14.ab1: 86071-87974 , 027_F09.ab1: 86114-88049 , 045_M11.ab1: 86093-88049

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_110 0.0 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
2 Hb_000371_080 0.0423546176 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
3 Hb_002078_450 0.0558277918 - - nuclear transport factor, putative [Ricinus communis]
4 Hb_022250_040 0.0667369976 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
5 Hb_001235_070 0.06742836 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001369_050 0.0679115124 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
7 Hb_009711_030 0.0694359474 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
8 Hb_084849_020 0.0706102002 - - ARF GTPase activator, putative [Ricinus communis]
9 Hb_001718_100 0.0709365842 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
10 Hb_012515_010 0.074397455 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
11 Hb_001243_050 0.0756688652 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
12 Hb_005997_010 0.0759745408 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
13 Hb_000087_020 0.0768300474 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
14 Hb_001584_070 0.077777084 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001427_120 0.0788707861 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
16 Hb_021650_030 0.0790569216 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
17 Hb_000061_330 0.0805871564 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
18 Hb_004657_020 0.0816785535 - - rer1 protein, putative [Ricinus communis]
19 Hb_071736_020 0.0822819171 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
20 Hb_003020_230 0.0835954127 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]

Gene co-expression network

sample Hb_005686_110 Hb_005686_110 Hb_000371_080 Hb_000371_080 Hb_005686_110--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_005686_110--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_005686_110--Hb_022250_040 Hb_001235_070 Hb_001235_070 Hb_005686_110--Hb_001235_070 Hb_001369_050 Hb_001369_050 Hb_005686_110--Hb_001369_050 Hb_009711_030 Hb_009711_030 Hb_005686_110--Hb_009711_030 Hb_000371_080--Hb_009711_030 Hb_000371_080--Hb_022250_040 Hb_003020_230 Hb_003020_230 Hb_000371_080--Hb_003020_230 Hb_001824_070 Hb_001824_070 Hb_000371_080--Hb_001824_070 Hb_005997_010 Hb_005997_010 Hb_000371_080--Hb_005997_010 Hb_071736_020 Hb_071736_020 Hb_002078_450--Hb_071736_020 Hb_000086_570 Hb_000086_570 Hb_002078_450--Hb_000086_570 Hb_002078_450--Hb_009711_030 Hb_001718_100 Hb_001718_100 Hb_002078_450--Hb_001718_100 Hb_002078_450--Hb_022250_040 Hb_022250_040--Hb_009711_030 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_001235_070--Hb_001369_050 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_084849_020 Hb_084849_020 Hb_001369_050--Hb_084849_020 Hb_001369_050--Hb_001718_100 Hb_092100_020 Hb_092100_020 Hb_001369_050--Hb_092100_020 Hb_003050_230 Hb_003050_230 Hb_001369_050--Hb_003050_230 Hb_009711_030--Hb_125000_010 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_009711_030--Hb_001824_070 Hb_002097_110 Hb_002097_110 Hb_009711_030--Hb_002097_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
214.566 61.2932 45.5783 80.1488 159.495 312.115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
378.339 322.156 211.086 90.969 37.9213

CAGE analysis