Hb_084849_020

Information

Type -
Description -
Location Contig84849: 30147-32266
Sequence    

Annotation

kegg
ID rcu:RCOM_0630050
description ARF GTPase activator, putative
nr
ID XP_002527798.1
description ARF GTPase activator, putative [Ricinus communis]
swissprot
ID Q9FVJ3
description ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1
trembl
ID B9SP79
description ARF GTPase activator, putative OS=Ricinus communis GN=RCOM_0630050 PE=4 SV=1
Gene Ontology
ID GO:0009507
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60266: 30079-30188 , PASA_asmbl_60267: 30467-32298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084849_020 0.0 - - ARF GTPase activator, putative [Ricinus communis]
2 Hb_001369_050 0.05289521 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
3 Hb_001718_100 0.0699521825 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
4 Hb_005686_110 0.0706102002 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
5 Hb_003050_230 0.0733556846 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001427_120 0.0742680979 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
7 Hb_000362_210 0.0746583635 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
8 Hb_071736_020 0.0805787501 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
9 Hb_000333_090 0.0820831415 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
10 Hb_002749_100 0.0829311722 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
11 Hb_002078_450 0.0847197593 - - nuclear transport factor, putative [Ricinus communis]
12 Hb_000086_570 0.0847606936 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
13 Hb_004899_320 0.0866958712 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
14 Hb_000087_020 0.089056176 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
15 Hb_021650_030 0.0899459282 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
16 Hb_007021_020 0.0909560194 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
17 Hb_011161_040 0.0910891379 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
18 Hb_003927_130 0.0913253236 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
19 Hb_001711_030 0.0922738091 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
20 Hb_001133_020 0.0924878409 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]

Gene co-expression network

sample Hb_084849_020 Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_084849_020--Hb_001369_050 Hb_001718_100 Hb_001718_100 Hb_084849_020--Hb_001718_100 Hb_005686_110 Hb_005686_110 Hb_084849_020--Hb_005686_110 Hb_003050_230 Hb_003050_230 Hb_084849_020--Hb_003050_230 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_000362_210 Hb_000362_210 Hb_084849_020--Hb_000362_210 Hb_001369_050--Hb_005686_110 Hb_001235_070 Hb_001235_070 Hb_001369_050--Hb_001235_070 Hb_001369_050--Hb_001718_100 Hb_092100_020 Hb_092100_020 Hb_001369_050--Hb_092100_020 Hb_001369_050--Hb_003050_230 Hb_001718_100--Hb_001427_120 Hb_071736_020 Hb_071736_020 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_000086_570 Hb_000086_570 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_000371_080 Hb_000371_080 Hb_005686_110--Hb_000371_080 Hb_005686_110--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_005686_110--Hb_022250_040 Hb_005686_110--Hb_001235_070 Hb_009711_030 Hb_009711_030 Hb_005686_110--Hb_009711_030 Hb_003050_230--Hb_005686_110 Hb_001437_220 Hb_001437_220 Hb_003050_230--Hb_001437_220 Hb_003050_230--Hb_092100_020 Hb_000061_330 Hb_000061_330 Hb_003050_230--Hb_000061_330 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_001427_120--Hb_000086_570 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_001427_120--Hb_071736_020 Hb_001427_120--Hb_022250_040 Hb_002660_160 Hb_002660_160 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_010172_030 Hb_010172_030 Hb_000362_210--Hb_010172_030 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.5402 21.5207 13.9683 31.5842 48.9333 110.953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
149.976 130.684 109.707 21.702 14.6086

CAGE analysis