Hb_000479_180

Information

Type -
Description -
Location Contig479: 125880-130726
Sequence    

Annotation

kegg
ID rcu:RCOM_0524310
description hypothetical protein
nr
ID XP_002526073.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJA4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0524310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44623: 125833-130832 , PASA_asmbl_44624: 126403-126737 , PASA_asmbl_44625: 129514-129794
cDNA
(Sanger)
(ID:Location)		 017_H11.ab1: 125833-130820 , 036_J08.ab1: 125833-130827

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004595_020 0.0703051348 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
3 Hb_011139_020 0.0810507929 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
4 Hb_000362_210 0.0834611414 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
5 Hb_012515_010 0.0888122938 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
6 Hb_000634_050 0.0899482008 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
7 Hb_000061_330 0.0927525318 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
8 Hb_003086_100 0.0936276666 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
9 Hb_005686_110 0.0964745921 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
10 Hb_001235_070 0.0969585717 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000089_130 0.0969777047 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
12 Hb_025193_050 0.0976693747 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
13 Hb_000333_090 0.0980696877 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
14 Hb_001584_070 0.1007825967 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002781_020 0.100995484 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
16 Hb_000417_110 0.101032975 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
17 Hb_001840_120 0.1015149842 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
18 Hb_002447_030 0.101933928 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
19 Hb_001454_330 0.1024004868 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
20 Hb_000371_080 0.103104712 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]

Gene co-expression network

sample Hb_000479_180 Hb_000479_180 Hb_004595_020 Hb_004595_020 Hb_000479_180--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_000479_180--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_000479_180--Hb_000362_210 Hb_012515_010 Hb_012515_010 Hb_000479_180--Hb_012515_010 Hb_000634_050 Hb_000634_050 Hb_000479_180--Hb_000634_050 Hb_000061_330 Hb_000061_330 Hb_000479_180--Hb_000061_330 Hb_001840_120 Hb_001840_120 Hb_004595_020--Hb_001840_120 Hb_004595_020--Hb_012515_010 Hb_004595_020--Hb_011139_020 Hb_000465_060 Hb_000465_060 Hb_004595_020--Hb_000465_060 Hb_025193_050 Hb_025193_050 Hb_004595_020--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_011139_020--Hb_000152_430 Hb_011139_020--Hb_012515_010 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_011139_020--Hb_001840_120 Hb_002660_160 Hb_002660_160 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_010172_030 Hb_010172_030 Hb_000362_210--Hb_010172_030 Hb_000362_210--Hb_000634_050 Hb_012515_010--Hb_025193_050 Hb_012515_010--Hb_000465_060 Hb_001584_070 Hb_001584_070 Hb_012515_010--Hb_001584_070 Hb_012515_010--Hb_024650_050 Hb_000417_110 Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_010883_150 Hb_010883_150 Hb_000061_330--Hb_010883_150 Hb_005686_110 Hb_005686_110 Hb_000061_330--Hb_005686_110 Hb_011931_050 Hb_011931_050 Hb_000061_330--Hb_011931_050 Hb_000061_330--Hb_001584_070 Hb_000061_330--Hb_000634_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.521 14.4234 17.7492 23.1887 108.663 157.686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
258.411 206.76 110.951 52.2542 20.0353

CAGE analysis