Hb_002660_160

Information

Type -
Description -
Location Contig2660: 136743-141513
Sequence    

Annotation

kegg
ID rcu:RCOM_1356420
description protein binding protein, putative
nr
ID XP_002519545.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q5XIV2
description Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus GN=March10 PE=2 SV=1
trembl
ID B9S0M6
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1356420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27796: 136674-140149 , PASA_asmbl_27797: 140553-141640 , PASA_asmbl_27798: 140553-141376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_160 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000362_210 0.0606710177 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
3 Hb_007021_020 0.0685129585 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
4 Hb_010172_030 0.075600118 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
5 Hb_007047_010 0.0826479899 - - PREDICTED: expansin-A13 [Jatropha curcas]
6 Hb_000085_250 0.0912099178 - - sodium/hydrogen exchanger, putative [Ricinus communis]
7 Hb_002749_100 0.0917416523 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
8 Hb_000212_260 0.0920620358 - - acyl-carrier-protein [Triadica sebifera]
9 Hb_000567_170 0.0930928375 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
10 Hb_084849_020 0.0950184777 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_002214_050 0.099035148 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
12 Hb_004410_010 0.1002240213 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
13 Hb_183963_020 0.1003551526 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
14 Hb_001584_300 0.1024339658 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
15 Hb_001427_120 0.107673449 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
16 Hb_002781_020 0.1083153779 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
17 Hb_002028_130 0.1083789228 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
18 Hb_002352_010 0.1092350917 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
19 Hb_116264_010 0.1097389058 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
20 Hb_002447_030 0.1107394137 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]

Gene co-expression network

sample Hb_002660_160 Hb_002660_160 Hb_000362_210 Hb_000362_210 Hb_002660_160--Hb_000362_210 Hb_007021_020 Hb_007021_020 Hb_002660_160--Hb_007021_020 Hb_010172_030 Hb_010172_030 Hb_002660_160--Hb_010172_030 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_000362_210--Hb_007021_020 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_000362_210--Hb_010172_030 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_010172_030--Hb_000212_260 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_002026_190 Hb_002026_190 Hb_007047_010--Hb_002026_190 Hb_007047_010--Hb_002749_100 Hb_002326_030 Hb_002326_030 Hb_007047_010--Hb_002326_030 Hb_007047_010--Hb_007021_020 Hb_002352_010 Hb_002352_010 Hb_007047_010--Hb_002352_010 Hb_001584_300 Hb_001584_300 Hb_000085_250--Hb_001584_300 Hb_002282_020 Hb_002282_020 Hb_000085_250--Hb_002282_020 Hb_002387_060 Hb_002387_060 Hb_000085_250--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_000085_250--Hb_000032_220 Hb_000085_250--Hb_010172_030 Hb_002749_100--Hb_084849_020 Hb_002749_100--Hb_000362_210 Hb_011161_040 Hb_011161_040 Hb_002749_100--Hb_011161_040 Hb_001133_020 Hb_001133_020 Hb_002749_100--Hb_001133_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3491 1.05907 1.38288 4.31155 8.57407 16.8408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4857 29.142 19.8282 2.87546 2.37555

CAGE analysis