Hb_002026_190

Information

Type -
Description -
Location Contig2026: 169918-174201
Sequence    

Annotation

kegg
ID rcu:RCOM_1686830
description hypothetical protein
nr
ID XP_012086899.1
description PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20591 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20651: 169971-171260 , PASA_asmbl_20652: 171275-171816 , PASA_asmbl_20653: 171886-172109 , PASA_asmbl_20654: 172796-174012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_190 0.0 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
2 Hb_007047_010 0.0808299335 - - PREDICTED: expansin-A13 [Jatropha curcas]
3 Hb_003777_180 0.1009797174 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
4 Hb_002326_030 0.1046918128 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
5 Hb_000048_050 0.1090851856 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
6 Hb_002749_100 0.1107381207 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
7 Hb_005463_020 0.1148878553 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
8 Hb_001366_200 0.1164173563 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005455_070 0.1195007512 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
10 Hb_001711_030 0.1200097081 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
11 Hb_000487_310 0.1222563778 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
12 Hb_004899_320 0.1235912483 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
13 Hb_003632_010 0.123796839 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000329_040 0.1253043641 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
15 Hb_002498_100 0.1267578342 - - bcr-associated protein, bap, putative [Ricinus communis]
16 Hb_012522_030 0.1271956488 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_002660_160 0.1278573378 - - protein binding protein, putative [Ricinus communis]
18 Hb_002119_120 0.1278614372 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
19 Hb_002352_010 0.1287913164 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
20 Hb_000046_110 0.1288263424 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002026_190 Hb_002026_190 Hb_007047_010 Hb_007047_010 Hb_002026_190--Hb_007047_010 Hb_003777_180 Hb_003777_180 Hb_002026_190--Hb_003777_180 Hb_002326_030 Hb_002326_030 Hb_002026_190--Hb_002326_030 Hb_000048_050 Hb_000048_050 Hb_002026_190--Hb_000048_050 Hb_002749_100 Hb_002749_100 Hb_002026_190--Hb_002749_100 Hb_005463_020 Hb_005463_020 Hb_002026_190--Hb_005463_020 Hb_002660_160 Hb_002660_160 Hb_007047_010--Hb_002660_160 Hb_007047_010--Hb_002749_100 Hb_007047_010--Hb_002326_030 Hb_007021_020 Hb_007021_020 Hb_007047_010--Hb_007021_020 Hb_002352_010 Hb_002352_010 Hb_007047_010--Hb_002352_010 Hb_000481_020 Hb_000481_020 Hb_003777_180--Hb_000481_020 Hb_000329_040 Hb_000329_040 Hb_003777_180--Hb_000329_040 Hb_000412_110 Hb_000412_110 Hb_003777_180--Hb_000412_110 Hb_002681_020 Hb_002681_020 Hb_003777_180--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_003777_180--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_003777_180--Hb_006569_020 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_000048_050--Hb_001473_130 Hb_000048_050--Hb_002352_010 Hb_084849_020 Hb_084849_020 Hb_000048_050--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_000048_050--Hb_001369_050 Hb_002025_320 Hb_002025_320 Hb_000048_050--Hb_002025_320 Hb_004899_320 Hb_004899_320 Hb_000048_050--Hb_004899_320 Hb_002749_100--Hb_084849_020 Hb_000362_210 Hb_000362_210 Hb_002749_100--Hb_000362_210 Hb_011161_040 Hb_011161_040 Hb_002749_100--Hb_011161_040 Hb_002749_100--Hb_002660_160 Hb_001133_020 Hb_001133_020 Hb_002749_100--Hb_001133_020 Hb_000062_340 Hb_000062_340 Hb_005463_020--Hb_000062_340 Hb_002539_080 Hb_002539_080 Hb_005463_020--Hb_002539_080 Hb_054865_130 Hb_054865_130 Hb_005463_020--Hb_054865_130 Hb_010589_040 Hb_010589_040 Hb_005463_020--Hb_010589_040 Hb_000260_060 Hb_000260_060 Hb_005463_020--Hb_000260_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3965 1.21101 1.72218 7.61044 9.10256 19.5863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1525 25.9423 28.7935 3.94279 6.17364

CAGE analysis