Hb_002539_080

Information

Type -
Description -
Location Contig2539: 60231-67570
Sequence    

Annotation

kegg
ID rcu:RCOM_1620950
description Triose phosphate/phosphate translocator, chloroplast precursor, putative
nr
ID XP_012068349.1
description PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
swissprot
ID P49132
description Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1
trembl
ID B9REF2
description Triose phosphate/phosphate translocator, chloroplast, putative OS=Ricinus communis GN=RCOM_1620950 PE=4 SV=1
Gene Ontology
ID GO:0016021
description triose phosphate phosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26510: 60539-65144 , PASA_asmbl_26511: 66084-66923 , PASA_asmbl_26512: 67161-67589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_080 0.0 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
2 Hb_002282_020 0.0899168509 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
3 Hb_001711_030 0.0921240135 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
4 Hb_002527_070 0.0938537548 - - axonemal dynein light chain, putative [Ricinus communis]
5 Hb_002735_060 0.0939003903 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
6 Hb_001863_480 0.0948183614 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
7 Hb_001439_170 0.0956810473 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
8 Hb_002681_110 0.0998216361 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
9 Hb_009265_060 0.1018136783 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
10 Hb_012522_030 0.1061125372 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_157022_020 0.1070997783 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
12 Hb_001677_110 0.1071978356 - - Protein YIPF1, putative [Ricinus communis]
13 Hb_002352_010 0.1079896916 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
14 Hb_044662_070 0.1118680015 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
15 Hb_000419_040 0.1149515018 - - chorismate synthase [Hevea brasiliensis]
16 Hb_002119_120 0.1156044451 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
17 Hb_005918_030 0.1156902042 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
18 Hb_010589_040 0.1160548125 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001584_300 0.11616087 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
20 Hb_001912_010 0.1177398195 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]

Gene co-expression network

sample Hb_002539_080 Hb_002539_080 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_001711_030 Hb_001711_030 Hb_002539_080--Hb_001711_030 Hb_002527_070 Hb_002527_070 Hb_002539_080--Hb_002527_070 Hb_002735_060 Hb_002735_060 Hb_002539_080--Hb_002735_060 Hb_001863_480 Hb_001863_480 Hb_002539_080--Hb_001863_480 Hb_001439_170 Hb_001439_170 Hb_002539_080--Hb_001439_170 Hb_002282_020--Hb_002527_070 Hb_012522_030 Hb_012522_030 Hb_002282_020--Hb_012522_030 Hb_000861_040 Hb_000861_040 Hb_002282_020--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_002282_020--Hb_002326_030 Hb_024650_020 Hb_024650_020 Hb_002282_020--Hb_024650_020 Hb_001711_030--Hb_001863_480 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_001711_030--Hb_012522_030 Hb_001711_030--Hb_002527_070 Hb_000922_270 Hb_000922_270 Hb_001711_030--Hb_000922_270 Hb_001711_030--Hb_001439_170 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_002527_070--Hb_000861_040 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_000983_100 Hb_000983_100 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_157022_020 Hb_157022_020 Hb_002735_060--Hb_157022_020 Hb_162275_030 Hb_162275_030 Hb_002735_060--Hb_162275_030 Hb_092100_020 Hb_092100_020 Hb_002735_060--Hb_092100_020 Hb_002735_060--Hb_001863_480 Hb_002716_070 Hb_002716_070 Hb_002735_060--Hb_002716_070 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_001863_480--Hb_001439_170 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_000012_130 Hb_000012_130 Hb_001439_170--Hb_000012_130 Hb_002119_120 Hb_002119_120 Hb_001439_170--Hb_002119_120 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2442 1.11579 3.20564 6.37127 9.36271 9.79425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0837 16.1462 24.8007 3.33375 1.74918

CAGE analysis