Hb_002119_120

Information

Type -
Description -
Location Contig2119: 171881-176263
Sequence    

Annotation

kegg
ID rcu:RCOM_1150020
description Anthranilate synthase component II, putative (EC:4.1.3.27)
nr
ID XP_012072372.1
description PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q42565
description Anthranilate synthase beta subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ASB1 PE=1 SV=1
trembl
ID A0A067L260
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04812 PE=4 SV=1
Gene Ontology
ID GO:0004049
description anthranilate synthase beta subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21932: 171723-172001 , PASA_asmbl_21933: 172031-176126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_120 0.0 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
2 Hb_004738_010 0.0655698606 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
3 Hb_001439_170 0.088757207 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
4 Hb_001863_480 0.0964038263 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
5 Hb_000487_310 0.1000070433 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
6 Hb_001711_030 0.1004853735 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
7 Hb_001437_220 0.1049541017 - - Transmembrane protein, putative [Ricinus communis]
8 Hb_162275_030 0.109791595 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
9 Hb_001762_060 0.1109370149 - - pantothenate kinase, putative [Ricinus communis]
10 Hb_002735_060 0.1122335532 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
11 Hb_000032_040 0.1127771829 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
12 Hb_000012_130 0.113952728 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
13 Hb_002539_080 0.1156044451 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
14 Hb_000922_270 0.1189457909 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
15 Hb_157022_020 0.1195596379 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
16 Hb_002600_100 0.1199142487 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
17 Hb_007924_020 0.1208241266 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_009404_020 0.1222209194 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012522_030 0.1222253511 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000069_100 0.1228121128 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002119_120 Hb_002119_120 Hb_004738_010 Hb_004738_010 Hb_002119_120--Hb_004738_010 Hb_001439_170 Hb_001439_170 Hb_002119_120--Hb_001439_170 Hb_001863_480 Hb_001863_480 Hb_002119_120--Hb_001863_480 Hb_000487_310 Hb_000487_310 Hb_002119_120--Hb_000487_310 Hb_001711_030 Hb_001711_030 Hb_002119_120--Hb_001711_030 Hb_001437_220 Hb_001437_220 Hb_002119_120--Hb_001437_220 Hb_004738_010--Hb_001863_480 Hb_000907_090 Hb_000907_090 Hb_004738_010--Hb_000907_090 Hb_004738_010--Hb_001439_170 Hb_004738_010--Hb_001711_030 Hb_000032_040 Hb_000032_040 Hb_004738_010--Hb_000032_040 Hb_000012_130 Hb_000012_130 Hb_001439_170--Hb_000012_130 Hb_001439_170--Hb_001711_030 Hb_001439_170--Hb_001863_480 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070 Hb_002539_080 Hb_002539_080 Hb_001439_170--Hb_002539_080 Hb_001863_480--Hb_001711_030 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_001863_480--Hb_002539_080 Hb_009404_020 Hb_009404_020 Hb_000487_310--Hb_009404_020 Hb_000487_310--Hb_001711_030 Hb_004108_230 Hb_004108_230 Hb_000487_310--Hb_004108_230 Hb_005432_030 Hb_005432_030 Hb_000487_310--Hb_005432_030 Hb_003777_180 Hb_003777_180 Hb_000487_310--Hb_003777_180 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_002527_070 Hb_002527_070 Hb_001711_030--Hb_002527_070 Hb_000922_270 Hb_000922_270 Hb_001711_030--Hb_000922_270 Hb_002214_050 Hb_002214_050 Hb_001437_220--Hb_002214_050 Hb_000120_750 Hb_000120_750 Hb_001437_220--Hb_000120_750 Hb_000045_190 Hb_000045_190 Hb_001437_220--Hb_000045_190 Hb_003050_230 Hb_003050_230 Hb_001437_220--Hb_003050_230 Hb_010172_030 Hb_010172_030 Hb_001437_220--Hb_010172_030 Hb_000333_090 Hb_000333_090 Hb_001437_220--Hb_000333_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.567 5.56294 14.4204 32.1971 54.5408 61.2854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
218.75 140.791 149.691 31.506 40.0102

CAGE analysis