Hb_000120_750

Information

Type desease resistance
Description Gene Name: NTPase_1
Location Contig120: 591392-593993
Sequence    

Annotation

kegg
ID rcu:RCOM_0874350
description ATP binding protein, putative
nr
ID XP_002521720.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9BSD7
description Cancer-related nucleoside-triphosphatase OS=Homo sapiens GN=NTPCR PE=1 SV=1
trembl
ID B9S6V1
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0874350 PE=3 SV=1
Gene Ontology
ID GO:0005524
description cancer-related nucleoside-triphosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06199: 591432-594028
cDNA
(Sanger)
(ID:Location)		 010_O03.ab1: 591705-593985 , 011_I21.ab1: 591677-593997 , 019_L07.ab1: 592355-593986 , 038_K08.ab1: 591780-594028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_750 0.0 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
2 Hb_004108_230 0.056948668 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
3 Hb_004837_140 0.0638288819 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
4 Hb_007479_020 0.0660785733 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
5 Hb_001383_060 0.0667920987 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_000317_340 0.067177466 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004204_120 0.0722164493 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
8 Hb_002918_200 0.0722703429 - - -
9 Hb_000170_010 0.0726685046 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_001584_070 0.0731448997 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002027_210 0.0745790519 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
12 Hb_003927_130 0.0746559881 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
13 Hb_029584_060 0.0747187857 - - Grave disease carrier protein, putative [Ricinus communis]
14 Hb_000045_190 0.0750143469 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
15 Hb_003125_150 0.0752459145 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
16 Hb_001433_050 0.0757720417 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_002571_020 0.0764142812 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
18 Hb_005997_010 0.0798348147 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
19 Hb_001722_100 0.0803918784 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005432_030 0.0806174219 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]

Gene co-expression network

sample Hb_000120_750 Hb_000120_750 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_007479_020 Hb_007479_020 Hb_000120_750--Hb_007479_020 Hb_001383_060 Hb_001383_060 Hb_000120_750--Hb_001383_060 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120 Hb_002918_200 Hb_002918_200 Hb_004108_230--Hb_002918_200 Hb_003175_040 Hb_003175_040 Hb_004108_230--Hb_003175_040 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_000170_010 Hb_000170_010 Hb_004837_140--Hb_000170_010 Hb_004837_140--Hb_002918_200 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010 Hb_001722_100 Hb_001722_100 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_007479_020--Hb_001383_060 Hb_001433_050 Hb_001433_050 Hb_007479_020--Hb_001433_050 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_003927_130 Hb_003927_130 Hb_001383_060--Hb_003927_130 Hb_001383_060--Hb_001433_050 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_032202_090 Hb_032202_090 Hb_000317_340--Hb_032202_090 Hb_143629_230 Hb_143629_230 Hb_000317_340--Hb_143629_230 Hb_000365_380 Hb_000365_380 Hb_000317_340--Hb_000365_380 Hb_000545_150 Hb_000545_150 Hb_000317_340--Hb_000545_150 Hb_000465_060 Hb_000465_060 Hb_000317_340--Hb_000465_060 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000798_030 Hb_000798_030 Hb_004204_120--Hb_000798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.607 22.4524 27.4913 43.9306 72.9125 85.8747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.132 188.988 98.714 39.7447 30.1305

CAGE analysis