Hb_000798_030

Information

Type -
Description -
Location Contig798: 9233-10513
Sequence    

Annotation

kegg
ID tcc:TCM_030811
description Ribosomal protein L30 family protein isoform 1
nr
ID XP_012074448.1
description PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
swissprot
ID Q47J85
description 50S ribosomal protein L30 OS=Dechloromonas aromatica (strain RCB) GN=rpmD PE=3 SV=1
trembl
ID A0A067KIS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09988 PE=3 SV=1
Gene Ontology
ID GO:0015934
description ribosomal protein l30 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000798_030 0.0 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
2 Hb_000417_110 0.065558584 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
3 Hb_070986_010 0.0710366224 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
4 Hb_000634_050 0.0722181835 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
5 Hb_000045_190 0.072796218 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
6 Hb_007741_050 0.07308212 - - vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_004204_120 0.0745327836 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
8 Hb_001257_080 0.0757794575 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001584_070 0.0791525586 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003018_120 0.080221586 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
11 Hb_002529_100 0.0812120987 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
12 Hb_000545_150 0.0828271291 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
13 Hb_000465_060 0.08420503 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
14 Hb_000120_750 0.0859938456 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
15 Hb_000684_090 0.0866245984 transcription factor TF Family: S1Fa-like -
16 Hb_004108_230 0.0880838428 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
17 Hb_002296_060 0.0882240575 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
18 Hb_000023_230 0.0889846665 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
19 Hb_000057_070 0.0897354903 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
20 Hb_001818_020 0.0898099649 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]

Gene co-expression network

sample Hb_000798_030 Hb_000798_030 Hb_000417_110 Hb_000417_110 Hb_000798_030--Hb_000417_110 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000634_050 Hb_000634_050 Hb_000798_030--Hb_000634_050 Hb_000045_190 Hb_000045_190 Hb_000798_030--Hb_000045_190 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_070986_010--Hb_004204_120 Hb_070986_010--Hb_001584_070 Hb_002105_090 Hb_002105_090 Hb_070986_010--Hb_002105_090 Hb_010883_150 Hb_010883_150 Hb_070986_010--Hb_010883_150 Hb_001257_080 Hb_001257_080 Hb_070986_010--Hb_001257_080 Hb_000634_050--Hb_000045_190 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000045_190--Hb_002529_100 Hb_007741_050--Hb_001257_080 Hb_007101_150 Hb_007101_150 Hb_007741_050--Hb_007101_150 Hb_007479_020 Hb_007479_020 Hb_007741_050--Hb_007479_020 Hb_000970_010 Hb_000970_010 Hb_007741_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_007741_050--Hb_001818_020 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_004204_120--Hb_000120_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.8021 12.9473 23.0096 13.5818 42.5408 46.4016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.3714 98.2319 39.3738 17.2626 8.0598

CAGE analysis