Hb_002030_040

Information

Type -
Description -
Location Contig2030: 73058-85028
Sequence    

Annotation

kegg
ID tcc:TCM_001016
description Target SNARE coiled-coil domain protein
nr
ID KDP29742.1
description hypothetical protein JCGZ_18677 [Jatropha curcas]
swissprot
ID Q8L9S0
description Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060 PE=2 SV=1
trembl
ID A0A067K0W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18677 PE=4 SV=1
Gene Ontology
ID GO:0000139
description bet1-like protein at4g14600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20822: 73005-84896 , PASA_asmbl_20823: 73381-73787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_040 0.0 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
2 Hb_009773_020 0.0545776921 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
3 Hb_000840_030 0.062608742 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
4 Hb_004204_120 0.067542981 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
5 Hb_065525_020 0.0695150819 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
6 Hb_002105_090 0.0746074947 - - Rab4 [Hevea brasiliensis]
7 Hb_004324_310 0.0746586064 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000987_070 0.0756291928 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
9 Hb_000331_080 0.076190726 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
10 Hb_000200_100 0.0762344909 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
11 Hb_002301_140 0.0763806722 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
12 Hb_000201_120 0.0776212239 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
13 Hb_001105_070 0.0806206873 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
14 Hb_023226_040 0.0823483337 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
15 Hb_001257_080 0.082407237 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001235_190 0.0826942841 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
17 Hb_033594_110 0.0829743348 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
18 Hb_007479_020 0.0834285624 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
19 Hb_165132_010 0.0838081011 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
20 Hb_001195_690 0.084470011 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]

Gene co-expression network

sample Hb_002030_040 Hb_002030_040 Hb_009773_020 Hb_009773_020 Hb_002030_040--Hb_009773_020 Hb_000840_030 Hb_000840_030 Hb_002030_040--Hb_000840_030 Hb_004204_120 Hb_004204_120 Hb_002030_040--Hb_004204_120 Hb_065525_020 Hb_065525_020 Hb_002030_040--Hb_065525_020 Hb_002105_090 Hb_002105_090 Hb_002030_040--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_002030_040--Hb_004324_310 Hb_009773_020--Hb_065525_020 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_009773_020--Hb_000840_030 Hb_001105_070 Hb_001105_070 Hb_009773_020--Hb_001105_070 Hb_002301_140 Hb_002301_140 Hb_009773_020--Hb_002301_140 Hb_153112_020 Hb_153112_020 Hb_000840_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_000840_030--Hb_000331_080 Hb_005539_350 Hb_005539_350 Hb_000840_030--Hb_005539_350 Hb_002874_190 Hb_002874_190 Hb_000840_030--Hb_002874_190 Hb_006541_030 Hb_006541_030 Hb_000840_030--Hb_006541_030 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750 Hb_000798_030 Hb_000798_030 Hb_004204_120--Hb_000798_030 Hb_158467_010 Hb_158467_010 Hb_065525_020--Hb_158467_010 Hb_010042_010 Hb_010042_010 Hb_065525_020--Hb_010042_010 Hb_000934_250 Hb_000934_250 Hb_065525_020--Hb_000934_250 Hb_065525_020--Hb_001105_070 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040 Hb_011689_080 Hb_011689_080 Hb_004324_310--Hb_011689_080 Hb_001195_690 Hb_001195_690 Hb_004324_310--Hb_001195_690 Hb_002078_150 Hb_002078_150 Hb_004324_310--Hb_002078_150 Hb_002774_060 Hb_002774_060 Hb_004324_310--Hb_002774_060 Hb_001377_290 Hb_001377_290 Hb_004324_310--Hb_001377_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.3369 3.30123 3.41653 5.49889 7.22473 7.12166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8626 12.731 8.91555 3.43411 2.37842

CAGE analysis