Hb_002685_190

Information

Type transcription factor
Description TF Family: SET
Location Contig2685: 163431-178624
Sequence    

Annotation

kegg
ID rcu:RCOM_1321680
description sterol regulatory element-binding protein site 2 protease, putative
nr
ID XP_012070396.1
description PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
swissprot
ID Q949Y5
description Probable zinc metalloprotease EGY1, chloroplastic OS=Arabidopsis thaliana GN=EGY1 PE=2 SV=1
trembl
ID A0A067KTV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02676 PE=4 SV=1
Gene Ontology
ID GO:0009507
description probable zinc metalloprotease chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27971: 164292-166275 , PASA_asmbl_27972: 168724-168908 , PASA_asmbl_27973: 169554-171309 , PASA_asmbl_27974: 171515-172372 , PASA_asmbl_27975: 172560-174220 , PASA_asmbl_27976: 174991-178550 , PASA_asmbl_27977: 177127-177597
cDNA
(Sanger)
(ID:Location)		 034_N01.ab1: 175263-178550

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_190 0.0 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
2 Hb_003599_040 0.0577659404 - - unnamed protein product [Vitis vinifera]
3 Hb_004204_120 0.0601555262 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
4 Hb_002963_010 0.0686180389 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
5 Hb_000465_060 0.068825817 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
6 Hb_009954_040 0.0699467478 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
7 Hb_001278_110 0.0717247866 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
8 Hb_000926_300 0.0740547193 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
9 Hb_118707_030 0.0754129317 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
10 Hb_000007_100 0.0770712867 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
11 Hb_003020_230 0.0773075976 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
12 Hb_000300_610 0.0781113414 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
13 Hb_159809_020 0.0788030473 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000720_120 0.0795604243 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
15 Hb_000170_010 0.0795912871 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_005997_010 0.0803194804 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
17 Hb_004837_140 0.0804989868 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
18 Hb_032717_080 0.0806109525 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
19 Hb_000371_080 0.0818765947 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
20 Hb_000103_090 0.0818900963 - - PREDICTED: protein RDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_002685_190 Hb_002685_190 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_009954_040 Hb_009954_040 Hb_002685_190--Hb_009954_040 Hb_001278_110 Hb_001278_110 Hb_002685_190--Hb_001278_110 Hb_002284_240 Hb_002284_240 Hb_003599_040--Hb_002284_240 Hb_159809_020 Hb_159809_020 Hb_003599_040--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_003599_040--Hb_000926_300 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_000007_100 Hb_000007_100 Hb_003599_040--Hb_000007_100 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750 Hb_000798_030 Hb_000798_030 Hb_004204_120--Hb_000798_030 Hb_002963_010--Hb_159809_020 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_000834_270 Hb_000834_270 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_001722_100 Hb_001722_100 Hb_002963_010--Hb_001722_100 Hb_001584_070 Hb_001584_070 Hb_000465_060--Hb_001584_070 Hb_012515_010 Hb_012515_010 Hb_000465_060--Hb_012515_010 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_001824_070 Hb_001824_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_003020_230 Hb_003020_230 Hb_009954_040--Hb_003020_230 Hb_000300_610 Hb_000300_610 Hb_009954_040--Hb_000300_610 Hb_005997_010 Hb_005997_010 Hb_009954_040--Hb_005997_010 Hb_000061_320 Hb_000061_320 Hb_009954_040--Hb_000061_320 Hb_000103_090 Hb_000103_090 Hb_009954_040--Hb_000103_090 Hb_003266_050 Hb_003266_050 Hb_001278_110--Hb_003266_050 Hb_004297_070 Hb_004297_070 Hb_001278_110--Hb_004297_070 Hb_002284_090 Hb_002284_090 Hb_001278_110--Hb_002284_090 Hb_181288_010 Hb_181288_010 Hb_001278_110--Hb_181288_010 Hb_001278_110--Hb_000300_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4822 4.28404 4.1381 4.44306 10.5777 13.2778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8709 19.494 8.816 6.56605 5.14161

CAGE analysis