Hb_000300_610

Information

Type -
Description -
Location Contig300: 564357-568639
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05350g
description POPTRDRAFT_729962; copper/zinc superoxide dismutase 3 family protein
nr
ID ADR70869.1
description cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
swissprot
ID O49044
description Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1
trembl
ID V5IV13
description Superoxide dismutase [Cu-Zn] OS=Hevea brasiliensis GN=Cu PE=2 SV=1
Gene Ontology
ID GO:0005773
description superoxide dismutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31627: 564312-568789 , PASA_asmbl_31628: 564312-568789 , PASA_asmbl_31629: 565609-568789
cDNA
(Sanger)
(ID:Location)		 010_N16.ab1: 564312-568552 , 013_B18.ab1: 564312-568412 , 026_E07.ab1: 564304-568431 , 037_J14.ab1: 564312-568631 , 037_O02.ab1: 564312-568631

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_610 0.0 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
2 Hb_009954_040 0.056530142 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
3 Hb_012338_010 0.0701337058 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000486_010 0.0772667132 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
5 Hb_000061_320 0.078099854 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
6 Hb_002685_190 0.0781113414 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
7 Hb_001278_110 0.0869829375 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
8 Hb_004595_020 0.0893556894 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
9 Hb_011310_190 0.0894991885 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
10 Hb_005997_010 0.0897921034 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
11 Hb_003020_230 0.0898102494 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
12 Hb_007254_040 0.0908914951 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
13 Hb_026527_030 0.0926852596 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
14 Hb_003540_040 0.0931048162 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
15 Hb_000371_080 0.0948392485 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
16 Hb_001235_070 0.0955553874 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002284_090 0.096095093 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
18 Hb_118707_030 0.0969020417 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
19 Hb_001776_110 0.0990187927 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
20 Hb_071130_030 0.0999054856 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_610 Hb_000300_610 Hb_009954_040 Hb_009954_040 Hb_000300_610--Hb_009954_040 Hb_012338_010 Hb_012338_010 Hb_000300_610--Hb_012338_010 Hb_000486_010 Hb_000486_010 Hb_000300_610--Hb_000486_010 Hb_000061_320 Hb_000061_320 Hb_000300_610--Hb_000061_320 Hb_002685_190 Hb_002685_190 Hb_000300_610--Hb_002685_190 Hb_001278_110 Hb_001278_110 Hb_000300_610--Hb_001278_110 Hb_003020_230 Hb_003020_230 Hb_009954_040--Hb_003020_230 Hb_005997_010 Hb_005997_010 Hb_009954_040--Hb_005997_010 Hb_009954_040--Hb_002685_190 Hb_009954_040--Hb_000061_320 Hb_000103_090 Hb_000103_090 Hb_009954_040--Hb_000103_090 Hb_004837_140 Hb_004837_140 Hb_012338_010--Hb_004837_140 Hb_000170_010 Hb_000170_010 Hb_012338_010--Hb_000170_010 Hb_004108_230 Hb_004108_230 Hb_012338_010--Hb_004108_230 Hb_012338_010--Hb_000061_320 Hb_005432_030 Hb_005432_030 Hb_012338_010--Hb_005432_030 Hb_063090_010 Hb_063090_010 Hb_000486_010--Hb_063090_010 Hb_005306_170 Hb_005306_170 Hb_000486_010--Hb_005306_170 Hb_003333_060 Hb_003333_060 Hb_000486_010--Hb_003333_060 Hb_000627_030 Hb_000627_030 Hb_000486_010--Hb_000627_030 Hb_000329_140 Hb_000329_140 Hb_000486_010--Hb_000329_140 Hb_003175_040 Hb_003175_040 Hb_000061_320--Hb_003175_040 Hb_000061_320--Hb_003020_230 Hb_026527_030 Hb_026527_030 Hb_000061_320--Hb_026527_030 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_002685_190--Hb_001278_110 Hb_003266_050 Hb_003266_050 Hb_001278_110--Hb_003266_050 Hb_004297_070 Hb_004297_070 Hb_001278_110--Hb_004297_070 Hb_002284_090 Hb_002284_090 Hb_001278_110--Hb_002284_090 Hb_181288_010 Hb_181288_010 Hb_001278_110--Hb_181288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.0854 13.7218 20.231 22.8716 68.8255 93.3126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.422 93.753 57.0758 43.478 39.8516

CAGE analysis