Hb_000627_030

Information

Type -
Description -
Location Contig627: 24613-36430
Sequence    

Annotation

kegg
ID rcu:RCOM_1678480
description amine oxidase, putative (EC:1.3.3.4)
nr
ID XP_002509548.1
description amine oxidase, putative [Ricinus communis]
swissprot
ID Q94IG7
description Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1
trembl
ID B9RBL4
description Amine oxidase, putative OS=Ricinus communis GN=RCOM_1678480 PE=4 SV=1
Gene Ontology
ID GO:0009941
description protoporphyrinogen mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51689: 30991-50172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_030 0.0 - - amine oxidase, putative [Ricinus communis]
2 Hb_000889_020 0.0789591779 - - ribosome biogenesis protein brix, putative [Ricinus communis]
3 Hb_012490_030 0.0867005624 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
4 Hb_000486_010 0.0867347366 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
5 Hb_003058_040 0.0922769293 - - rotamase, putative [Ricinus communis]
6 Hb_003673_060 0.0927084641 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
7 Hb_009133_010 0.0942519884 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
8 Hb_001936_060 0.0952650062 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
9 Hb_001350_010 0.0953011852 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
10 Hb_002174_060 0.0969638014 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
11 Hb_000373_240 0.0980288213 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
12 Hb_000329_140 0.0984039648 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
13 Hb_007218_080 0.0992413205 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
14 Hb_002728_070 0.0996145054 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
15 Hb_000599_110 0.1024822617 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000429_200 0.1025148551 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
17 Hb_000373_280 0.104268111 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
18 Hb_009467_060 0.1045432585 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
19 Hb_001390_110 0.1052052754 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
20 Hb_004310_130 0.105741058 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]

Gene co-expression network

sample Hb_000627_030 Hb_000627_030 Hb_000889_020 Hb_000889_020 Hb_000627_030--Hb_000889_020 Hb_012490_030 Hb_012490_030 Hb_000627_030--Hb_012490_030 Hb_000486_010 Hb_000486_010 Hb_000627_030--Hb_000486_010 Hb_003058_040 Hb_003058_040 Hb_000627_030--Hb_003058_040 Hb_003673_060 Hb_003673_060 Hb_000627_030--Hb_003673_060 Hb_009133_010 Hb_009133_010 Hb_000627_030--Hb_009133_010 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000179_020 Hb_000179_020 Hb_000889_020--Hb_000179_020 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030 Hb_002272_180 Hb_002272_180 Hb_012490_030--Hb_002272_180 Hb_000429_120 Hb_000429_120 Hb_012490_030--Hb_000429_120 Hb_020719_030 Hb_020719_030 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_012490_030--Hb_000889_020 Hb_002784_060 Hb_002784_060 Hb_012490_030--Hb_002784_060 Hb_000300_610 Hb_000300_610 Hb_000486_010--Hb_000300_610 Hb_063090_010 Hb_063090_010 Hb_000486_010--Hb_063090_010 Hb_005306_170 Hb_005306_170 Hb_000486_010--Hb_005306_170 Hb_003333_060 Hb_003333_060 Hb_000486_010--Hb_003333_060 Hb_000329_140 Hb_000329_140 Hb_000486_010--Hb_000329_140 Hb_002728_070 Hb_002728_070 Hb_003058_040--Hb_002728_070 Hb_001936_060 Hb_001936_060 Hb_003058_040--Hb_001936_060 Hb_003058_040--Hb_000329_140 Hb_009467_060 Hb_009467_060 Hb_003058_040--Hb_009467_060 Hb_001390_110 Hb_001390_110 Hb_003058_040--Hb_001390_110 Hb_006114_030 Hb_006114_030 Hb_003673_060--Hb_006114_030 Hb_000046_440 Hb_000046_440 Hb_003673_060--Hb_000046_440 Hb_005839_060 Hb_005839_060 Hb_003673_060--Hb_005839_060 Hb_003673_060--Hb_012490_030 Hb_003673_060--Hb_011794_060 Hb_009133_010--Hb_006692_030 Hb_001789_240 Hb_001789_240 Hb_009133_010--Hb_001789_240 Hb_004724_190 Hb_004724_190 Hb_009133_010--Hb_004724_190 Hb_009133_010--Hb_063090_010 Hb_009133_010--Hb_005839_060 Hb_009133_010--Hb_000889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9056 8.9882 10.3559 8.04037 26.5043 36.0554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.2436 18.8419 11.2601 17.5942 19.496

CAGE analysis