Hb_003058_040

Information

Type -
Description -
Location Contig3058: 15394-20833
Sequence    

Annotation

kegg
ID rcu:RCOM_1479020
description rotamase, putative (EC:5.2.1.8)
nr
ID XP_002526064.1
description rotamase, putative [Ricinus communis]
swissprot
ID Q93WI0
description Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis thaliana GN=At5g19370 PE=2 SV=1
trembl
ID B9SJ95
description Rotamase, putative OS=Ricinus communis GN=RCOM_1479020 PE=4 SV=1
Gene Ontology
ID GO:0009507
description rhodanese-like domain-containing protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32299: 15316-20781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_040 0.0 - - rotamase, putative [Ricinus communis]
2 Hb_002728_070 0.0858013476 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
3 Hb_001936_060 0.0902947992 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
4 Hb_000627_030 0.0922769293 - - amine oxidase, putative [Ricinus communis]
5 Hb_000329_140 0.0946524465 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
6 Hb_009467_060 0.0952589895 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
7 Hb_001390_110 0.0958799534 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
8 Hb_002141_030 0.09823415 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000521_080 0.0995260719 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
10 Hb_003939_050 0.1013279979 - - protein with unknown function [Ricinus communis]
11 Hb_000365_120 0.103546067 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
12 Hb_001124_120 0.1041590402 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
13 Hb_004310_130 0.1050721076 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
14 Hb_001199_020 0.1051699798 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
15 Hb_095595_010 0.1093946819 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
16 Hb_000599_110 0.1108196088 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003794_010 0.1117249226 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
18 Hb_007218_080 0.1125196391 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
19 Hb_000390_180 0.1125981376 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
20 Hb_007894_140 0.1127984129 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_040 Hb_003058_040 Hb_002728_070 Hb_002728_070 Hb_003058_040--Hb_002728_070 Hb_001936_060 Hb_001936_060 Hb_003058_040--Hb_001936_060 Hb_000627_030 Hb_000627_030 Hb_003058_040--Hb_000627_030 Hb_000329_140 Hb_000329_140 Hb_003058_040--Hb_000329_140 Hb_009467_060 Hb_009467_060 Hb_003058_040--Hb_009467_060 Hb_001390_110 Hb_001390_110 Hb_003058_040--Hb_001390_110 Hb_000025_470 Hb_000025_470 Hb_002728_070--Hb_000025_470 Hb_054865_120 Hb_054865_120 Hb_002728_070--Hb_054865_120 Hb_000058_100 Hb_000058_100 Hb_002728_070--Hb_000058_100 Hb_002728_070--Hb_000329_140 Hb_027472_150 Hb_027472_150 Hb_002728_070--Hb_027472_150 Hb_004310_130 Hb_004310_130 Hb_002728_070--Hb_004310_130 Hb_001936_060--Hb_001390_110 Hb_000390_180 Hb_000390_180 Hb_001936_060--Hb_000390_180 Hb_001289_080 Hb_001289_080 Hb_001936_060--Hb_001289_080 Hb_156973_010 Hb_156973_010 Hb_001936_060--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_001936_060--Hb_000853_230 Hb_002890_020 Hb_002890_020 Hb_001936_060--Hb_002890_020 Hb_000889_020 Hb_000889_020 Hb_000627_030--Hb_000889_020 Hb_012490_030 Hb_012490_030 Hb_000627_030--Hb_012490_030 Hb_000486_010 Hb_000486_010 Hb_000627_030--Hb_000486_010 Hb_003673_060 Hb_003673_060 Hb_000627_030--Hb_003673_060 Hb_009133_010 Hb_009133_010 Hb_000627_030--Hb_009133_010 Hb_005306_170 Hb_005306_170 Hb_000329_140--Hb_005306_170 Hb_000272_020 Hb_000272_020 Hb_000329_140--Hb_000272_020 Hb_000365_120 Hb_000365_120 Hb_000329_140--Hb_000365_120 Hb_004097_050 Hb_004097_050 Hb_000329_140--Hb_004097_050 Hb_007632_030 Hb_007632_030 Hb_000329_140--Hb_007632_030 Hb_001141_020 Hb_001141_020 Hb_009467_060--Hb_001141_020 Hb_003025_110 Hb_003025_110 Hb_009467_060--Hb_003025_110 Hb_001199_020 Hb_001199_020 Hb_009467_060--Hb_001199_020 Hb_002271_030 Hb_002271_030 Hb_009467_060--Hb_002271_030 Hb_000025_110 Hb_000025_110 Hb_009467_060--Hb_000025_110 Hb_001006_140 Hb_001006_140 Hb_009467_060--Hb_001006_140 Hb_008406_110 Hb_008406_110 Hb_001390_110--Hb_008406_110 Hb_001390_110--Hb_000390_180 Hb_001390_110--Hb_000853_230 Hb_000926_190 Hb_000926_190 Hb_001390_110--Hb_000926_190 Hb_000794_050 Hb_000794_050 Hb_001390_110--Hb_000794_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9889 10.5453 12.3041 9.46172 26.1713 23.9838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8034 18.5047 17.8471 16.081 23.2628

CAGE analysis