Hb_004097_050

Information

Type -
Description -
Location Contig4097: 78092-82148
Sequence    

Annotation

kegg
ID tcc:TCM_001451
description Squalene monooxygenase
nr
ID XP_012087661.1
description PREDICTED: squalene monooxygenase-like [Jatropha curcas]
swissprot
ID O48651
description Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
trembl
ID A0A067JLL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25497 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40454: 82934-84131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_050 0.0 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
2 Hb_032258_030 0.082222674 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
3 Hb_000329_140 0.0874861418 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
4 Hb_008785_040 0.0996392665 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
5 Hb_035755_010 0.1004681132 - - unknown [Populus trichocarpa]
6 Hb_012022_070 0.103882772 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
7 Hb_000373_280 0.1052114511 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
8 Hb_105123_010 0.1060313889 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
9 Hb_003226_180 0.1063555742 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
10 Hb_155159_030 0.1085161807 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
11 Hb_166222_010 0.1085700853 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
12 Hb_000486_010 0.1087832503 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
13 Hb_006913_030 0.1093503018 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
14 Hb_006502_090 0.1161083907 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
15 Hb_002154_100 0.1164243479 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
16 Hb_003939_050 0.1182499369 - - protein with unknown function [Ricinus communis]
17 Hb_005306_170 0.1186595407 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
18 Hb_000139_290 0.1205982208 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
19 Hb_000365_120 0.1226834945 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
20 Hb_009393_080 0.123991504 - - plant organelle RNA recognition domain protein [Medicago truncatula]

Gene co-expression network

sample Hb_004097_050 Hb_004097_050 Hb_032258_030 Hb_032258_030 Hb_004097_050--Hb_032258_030 Hb_000329_140 Hb_000329_140 Hb_004097_050--Hb_000329_140 Hb_008785_040 Hb_008785_040 Hb_004097_050--Hb_008785_040 Hb_035755_010 Hb_035755_010 Hb_004097_050--Hb_035755_010 Hb_012022_070 Hb_012022_070 Hb_004097_050--Hb_012022_070 Hb_000373_280 Hb_000373_280 Hb_004097_050--Hb_000373_280 Hb_155159_030 Hb_155159_030 Hb_032258_030--Hb_155159_030 Hb_008648_010 Hb_008648_010 Hb_032258_030--Hb_008648_010 Hb_105123_010 Hb_105123_010 Hb_032258_030--Hb_105123_010 Hb_009658_020 Hb_009658_020 Hb_032258_030--Hb_009658_020 Hb_005306_170 Hb_005306_170 Hb_032258_030--Hb_005306_170 Hb_002728_070 Hb_002728_070 Hb_000329_140--Hb_002728_070 Hb_000329_140--Hb_005306_170 Hb_000272_020 Hb_000272_020 Hb_000329_140--Hb_000272_020 Hb_000365_120 Hb_000365_120 Hb_000329_140--Hb_000365_120 Hb_007632_030 Hb_007632_030 Hb_000329_140--Hb_007632_030 Hb_002681_070 Hb_002681_070 Hb_008785_040--Hb_002681_070 Hb_005496_130 Hb_005496_130 Hb_008785_040--Hb_005496_130 Hb_006915_070 Hb_006915_070 Hb_008785_040--Hb_006915_070 Hb_002154_100 Hb_002154_100 Hb_008785_040--Hb_002154_100 Hb_004100_080 Hb_004100_080 Hb_008785_040--Hb_004100_080 Hb_000856_110 Hb_000856_110 Hb_008785_040--Hb_000856_110 Hb_000753_200 Hb_000753_200 Hb_035755_010--Hb_000753_200 Hb_001014_160 Hb_001014_160 Hb_035755_010--Hb_001014_160 Hb_035755_010--Hb_008785_040 Hb_001123_260 Hb_001123_260 Hb_035755_010--Hb_001123_260 Hb_004963_030 Hb_004963_030 Hb_035755_010--Hb_004963_030 Hb_010710_070 Hb_010710_070 Hb_035755_010--Hb_010710_070 Hb_012022_070--Hb_002154_100 Hb_012022_070--Hb_008785_040 Hb_006502_090 Hb_006502_090 Hb_012022_070--Hb_006502_090 Hb_012022_070--Hb_002681_070 Hb_006913_030 Hb_006913_030 Hb_012022_070--Hb_006913_030 Hb_003226_180 Hb_003226_180 Hb_000373_280--Hb_003226_180 Hb_018838_030 Hb_018838_030 Hb_000373_280--Hb_018838_030 Hb_000345_170 Hb_000345_170 Hb_000373_280--Hb_000345_170 Hb_001545_120 Hb_001545_120 Hb_000373_280--Hb_001545_120 Hb_000120_730 Hb_000120_730 Hb_000373_280--Hb_000120_730 Hb_002890_020 Hb_002890_020 Hb_000373_280--Hb_002890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56519 1.38643 1.5989 0.829928 3.65361 3.33295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.14577 4.28012 2.1064 3.62511 4.13738

CAGE analysis