Hb_001014_160

Information

Type -
Description -
Location Contig1014: 145015-153052
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12970g
description POPTRDRAFT_708845; Glycyl-tRNA synthetase family protein
nr
ID KDP23259.1
description hypothetical protein JCGZ_23092 [Jatropha curcas]
swissprot
ID O23627
description Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1
trembl
ID A0A067JUR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23092 PE=3 SV=1
Gene Ontology
ID GO:0004820
description glycine--trna ligase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00712: 145023-149099 , PASA_asmbl_00713: 145488-145796 , PASA_asmbl_00715: 150155-152987
cDNA
(Sanger)
(ID:Location)		 001_G02.ab1: 152576-152985

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_160 0.0 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
2 Hb_002154_100 0.053007337 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
3 Hb_004963_030 0.0591776005 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_007390_010 0.0675066022 - - catalytic, putative [Ricinus communis]
5 Hb_001442_040 0.0706521728 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
6 Hb_000331_260 0.0717987299 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
7 Hb_110291_010 0.0726768029 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010710_070 0.0729654879 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
9 Hb_001008_120 0.0738883072 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
10 Hb_003847_130 0.0752935704 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
11 Hb_028912_050 0.0756570565 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
12 Hb_004994_380 0.0760779794 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
13 Hb_188063_020 0.0768135278 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000830_030 0.0780309159 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
15 Hb_002263_020 0.0780430961 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_004143_060 0.0802303166 - - DNA binding protein, putative [Ricinus communis]
17 Hb_029879_010 0.08053989 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
18 Hb_007657_010 0.0811107447 - - ATP binding protein, putative [Ricinus communis]
19 Hb_002592_060 0.0811962367 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000254_090 0.0822795918 - - PREDICTED: la protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001014_160 Hb_001014_160 Hb_002154_100 Hb_002154_100 Hb_001014_160--Hb_002154_100 Hb_004963_030 Hb_004963_030 Hb_001014_160--Hb_004963_030 Hb_007390_010 Hb_007390_010 Hb_001014_160--Hb_007390_010 Hb_001442_040 Hb_001442_040 Hb_001014_160--Hb_001442_040 Hb_000331_260 Hb_000331_260 Hb_001014_160--Hb_000331_260 Hb_110291_010 Hb_110291_010 Hb_001014_160--Hb_110291_010 Hb_002154_100--Hb_000331_260 Hb_002154_100--Hb_007390_010 Hb_156279_020 Hb_156279_020 Hb_002154_100--Hb_156279_020 Hb_044728_010 Hb_044728_010 Hb_002154_100--Hb_044728_010 Hb_002154_100--Hb_110291_010 Hb_010710_070 Hb_010710_070 Hb_004963_030--Hb_010710_070 Hb_004963_030--Hb_001442_040 Hb_188063_020 Hb_188063_020 Hb_004963_030--Hb_188063_020 Hb_028912_050 Hb_028912_050 Hb_004963_030--Hb_028912_050 Hb_000343_250 Hb_000343_250 Hb_004963_030--Hb_000343_250 Hb_001599_040 Hb_001599_040 Hb_007390_010--Hb_001599_040 Hb_001279_150 Hb_001279_150 Hb_007390_010--Hb_001279_150 Hb_004143_060 Hb_004143_060 Hb_007390_010--Hb_004143_060 Hb_007390_010--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_007390_010--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_007390_010--Hb_001021_150 Hb_003847_130 Hb_003847_130 Hb_001442_040--Hb_003847_130 Hb_012733_030 Hb_012733_030 Hb_001442_040--Hb_012733_030 Hb_002592_060 Hb_002592_060 Hb_001442_040--Hb_002592_060 Hb_001301_100 Hb_001301_100 Hb_001442_040--Hb_001301_100 Hb_000331_260--Hb_156279_020 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_003878_070 Hb_003878_070 Hb_110291_010--Hb_003878_070 Hb_001638_170 Hb_001638_170 Hb_110291_010--Hb_001638_170 Hb_110291_010--Hb_004143_060 Hb_009218_010 Hb_009218_010 Hb_110291_010--Hb_009218_010 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5827 19.2729 21.5223 24.591 28.7905 42.6241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6534 34.0049 24.3035 29.9776 44.461

CAGE analysis