Hb_001301_100

Information

Type -
Description -
Location Contig1301: 86571-91246
Sequence    

Annotation

kegg
ID rcu:RCOM_0585730
description transporter, putative
nr
ID XP_002522974.1
description transporter, putative [Ricinus communis]
swissprot
ID Q8RWQ5
description Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1
trembl
ID B9SAF5
description Transporter, putative OS=Ricinus communis GN=RCOM_0585730 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable folate-biopterin transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09004: 86559-91262
cDNA
(Sanger)
(ID:Location)		 008_F22.ab1: 86559-89418 , 037_I08.ab1: 86559-89488

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_100 0.0 - - transporter, putative [Ricinus communis]
2 Hb_001442_040 0.0640872978 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
3 Hb_003847_130 0.0739706194 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
4 Hb_002044_150 0.078123377 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
5 Hb_004846_220 0.0803010242 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
6 Hb_007317_140 0.0823699373 - - expressed protein, putative [Ricinus communis]
7 Hb_002592_060 0.0861277791 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012733_030 0.0878369772 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
9 Hb_004254_090 0.0883562656 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
10 Hb_012098_080 0.0897197428 - - KOM, putative [Ricinus communis]
11 Hb_004963_030 0.0905839433 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_000466_140 0.0909444496 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
13 Hb_002600_150 0.0911426233 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
14 Hb_168978_030 0.0912015354 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
15 Hb_000137_090 0.0921346582 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
16 Hb_000028_480 0.0921410699 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
17 Hb_000139_370 0.0923003452 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
18 Hb_001135_220 0.0932741945 - - FGFR1 oncogene partner, putative [Ricinus communis]
19 Hb_002496_010 0.0934381781 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
20 Hb_004410_030 0.0943914857 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_100 Hb_001301_100 Hb_001442_040 Hb_001442_040 Hb_001301_100--Hb_001442_040 Hb_003847_130 Hb_003847_130 Hb_001301_100--Hb_003847_130 Hb_002044_150 Hb_002044_150 Hb_001301_100--Hb_002044_150 Hb_004846_220 Hb_004846_220 Hb_001301_100--Hb_004846_220 Hb_007317_140 Hb_007317_140 Hb_001301_100--Hb_007317_140 Hb_002592_060 Hb_002592_060 Hb_001301_100--Hb_002592_060 Hb_004963_030 Hb_004963_030 Hb_001442_040--Hb_004963_030 Hb_001442_040--Hb_003847_130 Hb_012733_030 Hb_012733_030 Hb_001442_040--Hb_012733_030 Hb_001442_040--Hb_002592_060 Hb_001014_160 Hb_001014_160 Hb_001442_040--Hb_001014_160 Hb_007632_240 Hb_007632_240 Hb_003847_130--Hb_007632_240 Hb_007645_100 Hb_007645_100 Hb_003847_130--Hb_007645_100 Hb_000466_140 Hb_000466_140 Hb_003847_130--Hb_000466_140 Hb_003847_130--Hb_002592_060 Hb_004410_030 Hb_004410_030 Hb_003847_130--Hb_004410_030 Hb_007479_040 Hb_007479_040 Hb_002044_150--Hb_007479_040 Hb_004254_090 Hb_004254_090 Hb_002044_150--Hb_004254_090 Hb_026198_070 Hb_026198_070 Hb_002044_150--Hb_026198_070 Hb_168978_030 Hb_168978_030 Hb_002044_150--Hb_168978_030 Hb_000207_050 Hb_000207_050 Hb_002044_150--Hb_000207_050 Hb_000138_100 Hb_000138_100 Hb_002044_150--Hb_000138_100 Hb_004846_220--Hb_000138_100 Hb_041290_020 Hb_041290_020 Hb_004846_220--Hb_041290_020 Hb_004846_220--Hb_002592_060 Hb_001021_150 Hb_001021_150 Hb_004846_220--Hb_001021_150 Hb_004846_220--Hb_004254_090 Hb_006483_110 Hb_006483_110 Hb_004846_220--Hb_006483_110 Hb_028912_050 Hb_028912_050 Hb_007317_140--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_007317_140--Hb_010710_070 Hb_000261_060 Hb_000261_060 Hb_007317_140--Hb_000261_060 Hb_007317_140--Hb_001442_040 Hb_003020_030 Hb_003020_030 Hb_007317_140--Hb_003020_030 Hb_002592_060--Hb_001021_150 Hb_002263_020 Hb_002263_020 Hb_002592_060--Hb_002263_020 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_002592_060--Hb_006483_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.10829 2.44979 4.99139 3.73245 6.54464 7.5767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.36976 5.95256 5.76055 8.15448 7.56815

CAGE analysis