Hb_000261_060

Information

Type -
Description -
Location Contig261: 36702-38045
Sequence    

Annotation

kegg
ID rcu:RCOM_1018040
description hypothetical protein
nr
ID XP_012071099.1
description PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
swissprot
ID Q8IDX6
description Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1
trembl
ID B9RWD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1018040 PE=4 SV=1
Gene Ontology
ID GO:0003899
description dna-directed rna polymerase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27236: 37245-38273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_060 0.0 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
2 Hb_007922_020 0.0601608414 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
3 Hb_036790_080 0.069372368 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
4 Hb_001369_750 0.0711771564 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
5 Hb_005253_030 0.0734468668 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_001008_120 0.075889146 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
7 Hb_007317_140 0.0812059906 - - expressed protein, putative [Ricinus communis]
8 Hb_010710_070 0.0812666836 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
9 Hb_002276_020 0.0829005871 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
10 Hb_001435_030 0.0868404588 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
11 Hb_028912_050 0.0871857906 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
12 Hb_000661_030 0.0902362655 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
13 Hb_000720_050 0.0913981759 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
14 Hb_005686_090 0.0931169221 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
15 Hb_001014_160 0.0934287626 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
16 Hb_004225_050 0.0936447765 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_003020_030 0.0937927122 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
18 Hb_000479_250 0.0938479142 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
19 Hb_000665_130 0.0939861014 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
20 Hb_032920_050 0.0956295752 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000261_060 Hb_000261_060 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_036790_080 Hb_036790_080 Hb_000261_060--Hb_036790_080 Hb_001369_750 Hb_001369_750 Hb_000261_060--Hb_001369_750 Hb_005253_030 Hb_005253_030 Hb_000261_060--Hb_005253_030 Hb_001008_120 Hb_001008_120 Hb_000261_060--Hb_001008_120 Hb_007317_140 Hb_007317_140 Hb_000261_060--Hb_007317_140 Hb_007922_020--Hb_036790_080 Hb_001435_030 Hb_001435_030 Hb_007922_020--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_007922_020--Hb_003994_110 Hb_007922_020--Hb_007317_140 Hb_032920_050 Hb_032920_050 Hb_007922_020--Hb_032920_050 Hb_036790_080--Hb_005253_030 Hb_036790_080--Hb_032920_050 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_000130_320 Hb_000130_320 Hb_036790_080--Hb_000130_320 Hb_036790_080--Hb_001435_030 Hb_000479_250 Hb_000479_250 Hb_001369_750--Hb_000479_250 Hb_002276_020 Hb_002276_020 Hb_001369_750--Hb_002276_020 Hb_001366_180 Hb_001366_180 Hb_001369_750--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_005253_030--Hb_001008_120 Hb_001936_090 Hb_001936_090 Hb_005253_030--Hb_001936_090 Hb_000465_190 Hb_000465_190 Hb_005253_030--Hb_000465_190 Hb_002758_010 Hb_002758_010 Hb_005253_030--Hb_002758_010 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090 Hb_007317_140--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_007317_140--Hb_010710_070 Hb_001301_100 Hb_001301_100 Hb_007317_140--Hb_001301_100 Hb_001442_040 Hb_001442_040 Hb_007317_140--Hb_001442_040 Hb_007317_140--Hb_003020_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32289 4.39527 3.49285 5.93307 7.31745 7.73228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3858 5.27474 6.47259 6.32666 14.1181

CAGE analysis