Hb_002758_010

Information

Type -
Description -
Location Contig2758: 5756-16923
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08640g
description POPTRDRAFT_819168; hypothetical protein
nr
ID XP_011019856.1
description PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
swissprot
ID Q6NQJ6
description Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RNR1 PE=2 SV=1
trembl
ID B9HBM5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08640g PE=4 SV=2
Gene Ontology
ID GO:0005623
description ribonuclease chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28845: 5751-10189 , PASA_asmbl_28846: 5908-10189 , PASA_asmbl_28847: 10797-11163 , PASA_asmbl_28848: 13441-16925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002758_010 0.0 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
2 Hb_000130_320 0.0668992322 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
3 Hb_002205_230 0.0771490792 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
4 Hb_005731_160 0.078509611 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001936_090 0.0787370085 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
6 Hb_005253_030 0.0848790288 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001589_010 0.0851892508 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
8 Hb_001163_060 0.0878379581 - - neutral/alkaline invertase [Manihot esculenta]
9 Hb_005116_050 0.0889751685 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_007763_070 0.0899100743 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
11 Hb_000482_190 0.091016464 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
12 Hb_001789_110 0.0910932703 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_001790_080 0.0911401564 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
14 Hb_036790_080 0.0913504532 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
15 Hb_000599_270 0.0939793119 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
16 Hb_032920_050 0.0942793304 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
17 Hb_018272_020 0.0952627562 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
18 Hb_000282_080 0.0966151532 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000648_040 0.0968314117 - - unknown [Populus trichocarpa]
20 Hb_000465_190 0.0975063921 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002758_010 Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_002758_010--Hb_000130_320 Hb_002205_230 Hb_002205_230 Hb_002758_010--Hb_002205_230 Hb_005731_160 Hb_005731_160 Hb_002758_010--Hb_005731_160 Hb_001936_090 Hb_001936_090 Hb_002758_010--Hb_001936_090 Hb_005253_030 Hb_005253_030 Hb_002758_010--Hb_005253_030 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010 Hb_000648_040 Hb_000648_040 Hb_000130_320--Hb_000648_040 Hb_001790_080 Hb_001790_080 Hb_000130_320--Hb_001790_080 Hb_032920_050 Hb_032920_050 Hb_000130_320--Hb_032920_050 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_000130_320--Hb_001936_090 Hb_000749_010 Hb_000749_010 Hb_002205_230--Hb_000749_010 Hb_000059_380 Hb_000059_380 Hb_002205_230--Hb_000059_380 Hb_000599_270 Hb_000599_270 Hb_002205_230--Hb_000599_270 Hb_002205_230--Hb_001589_010 Hb_021374_030 Hb_021374_030 Hb_002205_230--Hb_021374_030 Hb_000797_040 Hb_000797_040 Hb_002205_230--Hb_000797_040 Hb_002811_010 Hb_002811_010 Hb_005731_160--Hb_002811_010 Hb_000613_110 Hb_000613_110 Hb_005731_160--Hb_000613_110 Hb_005731_160--Hb_000130_320 Hb_055619_010 Hb_055619_010 Hb_005731_160--Hb_055619_010 Hb_005731_160--Hb_000648_040 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_000720_050 Hb_000720_050 Hb_001936_090--Hb_000720_050 Hb_188281_040 Hb_188281_040 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_036790_080 Hb_036790_080 Hb_005253_030--Hb_036790_080 Hb_001008_120 Hb_001008_120 Hb_005253_030--Hb_001008_120 Hb_000261_060 Hb_000261_060 Hb_005253_030--Hb_000261_060 Hb_005253_030--Hb_001936_090 Hb_000465_190 Hb_000465_190 Hb_005253_030--Hb_000465_190 Hb_001589_010--Hb_000720_050 Hb_001589_010--Hb_001936_090 Hb_005116_050 Hb_005116_050 Hb_001589_010--Hb_005116_050 Hb_001789_110 Hb_001789_110 Hb_001589_010--Hb_001789_110 Hb_004450_040 Hb_004450_040 Hb_001589_010--Hb_004450_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.32324 4.0947 4.2134 3.71979 3.20725 4.84472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16602 6.06272 3.22237 4.0697 10.6148

CAGE analysis