Hb_004450_040

Information

Type -
Description -
Location Contig4450: 41812-55388
Sequence    

Annotation

kegg
ID rcu:RCOM_0466830
description DNA ligase I, putative (EC:6.5.1.1)
nr
ID XP_012078043.1
description PREDICTED: DNA ligase 1 [Jatropha curcas]
swissprot
ID Q6PJP8
description DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3
trembl
ID A0A067K9W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13062 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42937: 43281-43688 , PASA_asmbl_42938: 44465-49036 , PASA_asmbl_42939: 45926-48995 , PASA_asmbl_42940: 46174-46341 , PASA_asmbl_42941: 52110-55079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004450_040 0.0 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
2 Hb_000075_040 0.0487732099 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
3 Hb_000462_170 0.0513303196 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001946_400 0.0662633817 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
5 Hb_001021_150 0.0722995235 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
6 Hb_001301_150 0.0770542081 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
7 Hb_000708_030 0.0832300073 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
8 Hb_002205_230 0.0840768295 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_001589_010 0.0848011613 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
10 Hb_003517_040 0.0851936285 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
11 Hb_000749_010 0.0859904991 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
12 Hb_004310_140 0.087104908 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000816_250 0.0878071195 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
14 Hb_006831_140 0.0880341493 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000317_050 0.0886959 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
16 Hb_027073_020 0.0892651003 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
17 Hb_003883_060 0.0893273951 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
18 Hb_002592_060 0.0896834053 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001789_110 0.091033692 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_189216_020 0.0914646647 - - PREDICTED: translin [Jatropha curcas]

Gene co-expression network

sample Hb_004450_040 Hb_004450_040 Hb_000075_040 Hb_000075_040 Hb_004450_040--Hb_000075_040 Hb_000462_170 Hb_000462_170 Hb_004450_040--Hb_000462_170 Hb_001946_400 Hb_001946_400 Hb_004450_040--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_004450_040--Hb_001021_150 Hb_001301_150 Hb_001301_150 Hb_004450_040--Hb_001301_150 Hb_000708_030 Hb_000708_030 Hb_004450_040--Hb_000708_030 Hb_000075_040--Hb_001021_150 Hb_000075_040--Hb_001946_400 Hb_001247_310 Hb_001247_310 Hb_000075_040--Hb_001247_310 Hb_003292_030 Hb_003292_030 Hb_000075_040--Hb_003292_030 Hb_002553_060 Hb_002553_060 Hb_000075_040--Hb_002553_060 Hb_000462_170--Hb_000708_030 Hb_006831_140 Hb_006831_140 Hb_000462_170--Hb_006831_140 Hb_000317_050 Hb_000317_050 Hb_000462_170--Hb_000317_050 Hb_000462_170--Hb_001301_150 Hb_000462_170--Hb_001946_400 Hb_001946_400--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_001946_400--Hb_002553_060 Hb_008847_030 Hb_008847_030 Hb_001946_400--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_001946_400--Hb_007416_340 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_001021_150--Hb_008847_030 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_003883_060 Hb_003883_060 Hb_001301_150--Hb_003883_060 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_004319_080 Hb_004319_080 Hb_001301_150--Hb_004319_080 Hb_001876_050 Hb_001876_050 Hb_001301_150--Hb_001876_050 Hb_000329_800 Hb_000329_800 Hb_001301_150--Hb_000329_800 Hb_183510_020 Hb_183510_020 Hb_001301_150--Hb_183510_020 Hb_000708_030--Hb_006831_140 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_005730_040 Hb_005730_040 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77093 2.16586 2.51105 2.4575 2.15236 2.38608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19836 3.44023 1.47096 3.25729 4.04192

CAGE analysis