Hb_005730_040

Information

Type -
Description -
Location Contig5730: 47755-65377
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa004338mg
description hypothetical protein
nr
ID XP_007215123.1
description hypothetical protein PRUPE_ppa004338mg [Prunus persica]
swissprot
ID Q39247
description Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=1 SV=1
trembl
ID M5WR94
description Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Prunus persica GN=PRUPE_ppa004338mg PE=3 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 55 kda regulatory subunit b beta isoform-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49456: 47789-65460 , PASA_asmbl_49457: 49467-50066
cDNA
(Sanger)
(ID:Location)		 031_P23.ab1: 60828-65460 , 035_A04.ab1: 61595-65443

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_040 0.0 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
2 Hb_000976_140 0.0347572996 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
3 Hb_002849_130 0.0483417487 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
4 Hb_005867_070 0.0515346819 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000708_030 0.0559825597 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
6 Hb_000170_090 0.0565072701 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
7 Hb_001225_040 0.0591048195 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
8 Hb_001481_060 0.0598947422 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
9 Hb_004452_110 0.0600384702 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
10 Hb_015807_050 0.0601998955 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
11 Hb_000313_220 0.0609041706 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
12 Hb_000327_270 0.0610555316 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
13 Hb_093458_040 0.0611439445 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
14 Hb_003428_010 0.061318906 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
15 Hb_001922_150 0.0618519851 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
16 Hb_183433_010 0.0624303063 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
17 Hb_003517_040 0.0630223735 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
18 Hb_007590_020 0.0637032202 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
19 Hb_001377_190 0.0645732304 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
20 Hb_003680_120 0.0646371465 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]

Gene co-expression network

sample Hb_005730_040 Hb_005730_040 Hb_000976_140 Hb_000976_140 Hb_005730_040--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_005730_040--Hb_002849_130 Hb_005867_070 Hb_005867_070 Hb_005730_040--Hb_005867_070 Hb_000708_030 Hb_000708_030 Hb_005730_040--Hb_000708_030 Hb_000170_090 Hb_000170_090 Hb_005730_040--Hb_000170_090 Hb_001225_040 Hb_001225_040 Hb_005730_040--Hb_001225_040 Hb_000313_220 Hb_000313_220 Hb_000976_140--Hb_000313_220 Hb_000976_140--Hb_002849_130 Hb_015807_050 Hb_015807_050 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000976_140--Hb_000170_090 Hb_002849_130--Hb_000313_220 Hb_093458_040 Hb_093458_040 Hb_002849_130--Hb_093458_040 Hb_003428_010 Hb_003428_010 Hb_002849_130--Hb_003428_010 Hb_002849_130--Hb_015807_050 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_006831_140 Hb_006831_140 Hb_000708_030--Hb_006831_140 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_000708_030--Hb_093458_040 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160 Hb_001225_040--Hb_004837_180 Hb_005653_090 Hb_005653_090 Hb_001225_040--Hb_005653_090 Hb_006520_040 Hb_006520_040 Hb_001225_040--Hb_006520_040 Hb_003030_060 Hb_003030_060 Hb_001225_040--Hb_003030_060 Hb_011537_050 Hb_011537_050 Hb_001225_040--Hb_011537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6697 14.6002 14.5745 14.6664 10.7642 13.6942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0884 11.7449 9.83344 12.0457 14.628

CAGE analysis