Hb_011537_050

Information

Type -
Description -
Location Contig11537: 38921-43845
Sequence    

Annotation

kegg
ID pmum:103341823
description uncharacterized LOC103341823
nr
ID XP_012087435.1
description PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
swissprot
ID F4K2F0
description Protein EMSY-LIKE 3 OS=Arabidopsis thaliana GN=EML3 PE=1 SV=1
trembl
ID A0A067JYR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22670 PE=4 SV=1
Gene Ontology
ID GO:0008284
description emsy n terminus plant tudor-like domains-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04648: 39000-43729 , PASA_asmbl_04649: 39000-42771 , PASA_asmbl_04650: 40260-40469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_050 0.0 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
2 Hb_000329_370 0.0628960054 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
3 Hb_001225_040 0.0640729014 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
4 Hb_001080_230 0.0652883738 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
5 Hb_003030_060 0.0702787513 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
6 Hb_000025_410 0.0709104411 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
7 Hb_000003_190 0.0731658495 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
8 Hb_001227_030 0.0755424906 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
9 Hb_000170_150 0.0765389405 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
10 Hb_000092_020 0.0770888574 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
11 Hb_002374_010 0.077134949 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
12 Hb_001430_080 0.0773536741 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
13 Hb_004837_180 0.0777721087 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
14 Hb_000264_030 0.077807405 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
15 Hb_002641_030 0.0787971114 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
16 Hb_000134_270 0.078954472 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
17 Hb_002007_020 0.0795241883 - - PREDICTED: ATP-dependent DNA helicase Q-like SIM [Jatropha curcas]
18 Hb_183612_040 0.0796302446 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
19 Hb_007123_030 0.0798405991 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
20 Hb_006520_040 0.0803961938 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011537_050 Hb_011537_050 Hb_000329_370 Hb_000329_370 Hb_011537_050--Hb_000329_370 Hb_001225_040 Hb_001225_040 Hb_011537_050--Hb_001225_040 Hb_001080_230 Hb_001080_230 Hb_011537_050--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_011537_050--Hb_003030_060 Hb_000025_410 Hb_000025_410 Hb_011537_050--Hb_000025_410 Hb_000003_190 Hb_000003_190 Hb_011537_050--Hb_000003_190 Hb_012194_030 Hb_012194_030 Hb_000329_370--Hb_012194_030 Hb_005489_020 Hb_005489_020 Hb_000329_370--Hb_005489_020 Hb_010712_050 Hb_010712_050 Hb_000329_370--Hb_010712_050 Hb_002085_030 Hb_002085_030 Hb_000329_370--Hb_002085_030 Hb_000441_120 Hb_000441_120 Hb_000329_370--Hb_000441_120 Hb_004837_180 Hb_004837_180 Hb_001225_040--Hb_004837_180 Hb_005653_090 Hb_005653_090 Hb_001225_040--Hb_005653_090 Hb_006520_040 Hb_006520_040 Hb_001225_040--Hb_006520_040 Hb_005730_040 Hb_005730_040 Hb_001225_040--Hb_005730_040 Hb_001225_040--Hb_003030_060 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_001080_230--Hb_003030_060 Hb_003030_060--Hb_010712_050 Hb_003030_060--Hb_004837_180 Hb_001546_080 Hb_001546_080 Hb_003030_060--Hb_001546_080 Hb_003030_060--Hb_012194_030 Hb_001227_030 Hb_001227_030 Hb_000025_410--Hb_001227_030 Hb_008406_200 Hb_008406_200 Hb_000025_410--Hb_008406_200 Hb_002890_290 Hb_002890_290 Hb_000025_410--Hb_002890_290 Hb_000025_410--Hb_005653_090 Hb_000696_230 Hb_000696_230 Hb_000025_410--Hb_000696_230 Hb_000403_050 Hb_000403_050 Hb_000025_410--Hb_000403_050 Hb_000003_190--Hb_000092_020 Hb_000003_190--Hb_003470_080 Hb_000003_190--Hb_002872_040 Hb_000003_190--Hb_000395_130 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1052 29.2956 18.1492 12.6206 17.3435 21.556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6144 16.4597 10.2585 22.5952 18.8181

CAGE analysis