Hb_005653_090

Information

Type -
Description -
Location Contig5653: 86012-92873
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14710g
description transducin family protein
nr
ID XP_012072802.1
description PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
swissprot
ID Q9LXN4
description Protein HIRA OS=Arabidopsis thaliana GN=HIRA PE=1 SV=2
trembl
ID A0A067KRF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07934 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein hira-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49003: 86208-92993 , PASA_asmbl_49004: 87858-88419 , PASA_asmbl_49005: 87304-87589
cDNA
(Sanger)
(ID:Location)		 005_M17.ab1: 90461-92211 , 029_N02.ab1: 90461-92137

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005653_090 0.0 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
2 Hb_001225_040 0.0528227788 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
3 Hb_000331_680 0.055869095 - - Protein bem46, putative [Ricinus communis]
4 Hb_003464_090 0.0562395632 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
5 Hb_008406_200 0.056319586 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
6 Hb_003849_110 0.0623637211 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
7 Hb_000603_280 0.0626323293 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
8 Hb_002028_210 0.0637998039 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
9 Hb_000327_270 0.064351654 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
10 Hb_007163_120 0.0658756163 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
11 Hb_000025_410 0.0666141369 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
12 Hb_003866_080 0.0670311319 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
13 Hb_003929_280 0.0670349276 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
14 Hb_004837_180 0.0671080674 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_000172_430 0.0671731813 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001751_140 0.0680037479 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
17 Hb_000803_070 0.0683689625 - - PREDICTED: protein TRAUCO [Jatropha curcas]
18 Hb_003030_060 0.0690251809 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
19 Hb_002492_010 0.0704230932 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
20 Hb_000861_080 0.0705621847 - - PREDICTED: protein ELC-like [Jatropha curcas]

Gene co-expression network

sample Hb_005653_090 Hb_005653_090 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_000331_680 Hb_000331_680 Hb_005653_090--Hb_000331_680 Hb_003464_090 Hb_003464_090 Hb_005653_090--Hb_003464_090 Hb_008406_200 Hb_008406_200 Hb_005653_090--Hb_008406_200 Hb_003849_110 Hb_003849_110 Hb_005653_090--Hb_003849_110 Hb_000603_280 Hb_000603_280 Hb_005653_090--Hb_000603_280 Hb_004837_180 Hb_004837_180 Hb_001225_040--Hb_004837_180 Hb_006520_040 Hb_006520_040 Hb_001225_040--Hb_006520_040 Hb_005730_040 Hb_005730_040 Hb_001225_040--Hb_005730_040 Hb_003030_060 Hb_003030_060 Hb_001225_040--Hb_003030_060 Hb_011537_050 Hb_011537_050 Hb_001225_040--Hb_011537_050 Hb_000077_140 Hb_000077_140 Hb_000331_680--Hb_000077_140 Hb_000331_680--Hb_003464_090 Hb_000069_310 Hb_000069_310 Hb_000331_680--Hb_000069_310 Hb_002890_290 Hb_002890_290 Hb_000331_680--Hb_002890_290 Hb_000327_270 Hb_000327_270 Hb_000331_680--Hb_000327_270 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_016172_020 Hb_016172_020 Hb_008406_200--Hb_016172_020 Hb_001409_020 Hb_001409_020 Hb_008406_200--Hb_001409_020 Hb_000345_380 Hb_000345_380 Hb_008406_200--Hb_000345_380 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_000343_250 Hb_000343_250 Hb_008406_200--Hb_000343_250 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_002843_120 Hb_002843_120 Hb_000603_280--Hb_002843_120 Hb_000603_280--Hb_000077_140 Hb_000603_280--Hb_007163_120 Hb_000603_280--Hb_008406_200 Hb_013399_100 Hb_013399_100 Hb_000603_280--Hb_013399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1459 17.6855 12.5845 11.7768 9.41635 14.4791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5246 12.5984 11.2374 11.2057 11.2109

CAGE analysis