Hb_000343_250

Information

Type -
Description -
Location Contig343: 210544-217780
Sequence    

Annotation

kegg
ID rcu:RCOM_0979860
description hypothetical protein
nr
ID XP_012073306.1
description PREDICTED: protein CASC3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06244 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35856: 210999-217667 , PASA_asmbl_35857: 216563-217643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_250 0.0 - - PREDICTED: protein CASC3 [Jatropha curcas]
2 Hb_002732_040 0.0415607474 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
3 Hb_000462_060 0.0537292213 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
4 Hb_000200_380 0.0593929923 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
5 Hb_008406_200 0.0606637497 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
6 Hb_000346_060 0.061447596 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
7 Hb_004963_030 0.0615887867 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_007657_010 0.062144196 - - ATP binding protein, putative [Ricinus communis]
9 Hb_138596_010 0.0622720827 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
10 Hb_188063_020 0.0623358213 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002218_090 0.0635731935 - - Poly(rC)-binding protein, putative [Ricinus communis]
12 Hb_002849_100 0.0666100772 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
13 Hb_001409_020 0.0673016855 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
14 Hb_005779_080 0.0687384205 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
15 Hb_001047_220 0.0690632102 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
16 Hb_007747_040 0.0693903616 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
17 Hb_002263_020 0.0694111657 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
18 Hb_016172_020 0.0696585735 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
19 Hb_000327_270 0.0696785225 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
20 Hb_000958_140 0.0698300656 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_250 Hb_000343_250 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_002732_040--Hb_000462_060 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_000327_270 Hb_000327_270 Hb_002732_040--Hb_000327_270 Hb_002272_130 Hb_002272_130 Hb_000462_060--Hb_002272_130 Hb_000789_310 Hb_000789_310 Hb_000462_060--Hb_000789_310 Hb_000617_180 Hb_000617_180 Hb_000462_060--Hb_000617_180 Hb_001047_220 Hb_001047_220 Hb_000462_060--Hb_001047_220 Hb_004097_070 Hb_004097_070 Hb_000200_380--Hb_004097_070 Hb_000200_380--Hb_002732_040 Hb_019280_030 Hb_019280_030 Hb_000200_380--Hb_019280_030 Hb_033642_030 Hb_033642_030 Hb_000200_380--Hb_033642_030 Hb_000200_380--Hb_002272_130 Hb_016172_020 Hb_016172_020 Hb_008406_200--Hb_016172_020 Hb_001409_020 Hb_001409_020 Hb_008406_200--Hb_001409_020 Hb_005653_090 Hb_005653_090 Hb_008406_200--Hb_005653_090 Hb_000345_380 Hb_000345_380 Hb_008406_200--Hb_000345_380 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_007657_010 Hb_007657_010 Hb_000346_060--Hb_007657_010 Hb_004003_040 Hb_004003_040 Hb_000346_060--Hb_004003_040 Hb_000346_060--Hb_004097_070 Hb_000346_060--Hb_002732_040 Hb_000346_060--Hb_004963_030 Hb_010710_070 Hb_010710_070 Hb_004963_030--Hb_010710_070 Hb_001442_040 Hb_001442_040 Hb_004963_030--Hb_001442_040 Hb_188063_020 Hb_188063_020 Hb_004963_030--Hb_188063_020 Hb_001014_160 Hb_001014_160 Hb_004963_030--Hb_001014_160 Hb_028912_050 Hb_028912_050 Hb_004963_030--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.434 16.6761 15.3544 11.9637 17.9623 20.4862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4979 12.1643 16.56 12.6175 18.8841

CAGE analysis