Hb_004963_030

Information

Type -
Description -
Location Contig4963: 42578-54741
Sequence    

Annotation

kegg
ID rcu:RCOM_1334650
description nucleic acid binding protein, putative
nr
ID XP_012075515.1
description PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID B5X582
description Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g30680 PE=1 SV=1
trembl
ID B9SAY6
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1334650 PE=4 SV=1
Gene Ontology
ID GO:0003697
description twinkle homolog chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45481: 46958-53405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004963_030 0.0 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_010710_070 0.0492995599 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
3 Hb_001442_040 0.0512361049 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
4 Hb_188063_020 0.0584289465 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001014_160 0.0591776005 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
6 Hb_028912_050 0.060957288 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
7 Hb_000343_250 0.0615887867 - - PREDICTED: protein CASC3 [Jatropha curcas]
8 Hb_002849_100 0.0638086072 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
9 Hb_002592_060 0.067442248 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002263_020 0.0694066093 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
11 Hb_000346_060 0.0709245025 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
12 Hb_007657_010 0.0712751981 - - ATP binding protein, putative [Ricinus communis]
13 Hb_007426_110 0.0716418241 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
14 Hb_003847_130 0.0723614823 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
15 Hb_006483_110 0.0753209507 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
16 Hb_000028_480 0.0754217196 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
17 Hb_007645_100 0.0755198536 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
18 Hb_000076_130 0.0756037895 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
19 Hb_165928_020 0.0757243032 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
20 Hb_000617_180 0.0758669582 - - hypothetical protein B456_013G125900 [Gossypium raimondii]

Gene co-expression network

sample Hb_004963_030 Hb_004963_030 Hb_010710_070 Hb_010710_070 Hb_004963_030--Hb_010710_070 Hb_001442_040 Hb_001442_040 Hb_004963_030--Hb_001442_040 Hb_188063_020 Hb_188063_020 Hb_004963_030--Hb_188063_020 Hb_001014_160 Hb_001014_160 Hb_004963_030--Hb_001014_160 Hb_028912_050 Hb_028912_050 Hb_004963_030--Hb_028912_050 Hb_000343_250 Hb_000343_250 Hb_004963_030--Hb_000343_250 Hb_010710_070--Hb_028912_050 Hb_010710_070--Hb_188063_020 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_002849_100 Hb_002849_100 Hb_010710_070--Hb_002849_100 Hb_010710_070--Hb_001442_040 Hb_003847_130 Hb_003847_130 Hb_001442_040--Hb_003847_130 Hb_012733_030 Hb_012733_030 Hb_001442_040--Hb_012733_030 Hb_002592_060 Hb_002592_060 Hb_001442_040--Hb_002592_060 Hb_001301_100 Hb_001301_100 Hb_001442_040--Hb_001301_100 Hb_001442_040--Hb_001014_160 Hb_004225_050 Hb_004225_050 Hb_188063_020--Hb_004225_050 Hb_188063_020--Hb_002849_100 Hb_188063_020--Hb_028912_050 Hb_009548_020 Hb_009548_020 Hb_188063_020--Hb_009548_020 Hb_002154_100 Hb_002154_100 Hb_001014_160--Hb_002154_100 Hb_007390_010 Hb_007390_010 Hb_001014_160--Hb_007390_010 Hb_000331_260 Hb_000331_260 Hb_001014_160--Hb_000331_260 Hb_110291_010 Hb_110291_010 Hb_001014_160--Hb_110291_010 Hb_028912_050--Hb_004225_050 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.89644 5.57327 6.34906 4.96522 8.33597 10.7431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.50636 6.37099 6.57819 7.02985 9.87996

CAGE analysis