Hb_002849_100

Information

Type -
Description -
Location Contig2849: 74940-78794
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16360g
description POPTRDRAFT_552196; hypothetical protein
nr
ID XP_012083330.1
description PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
swissprot
ID Q8VZL4
description Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1
trembl
ID A0A067K9U2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14360 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29829: 74935-78792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_100 0.0 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
2 Hb_188063_020 0.0569104066 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010710_070 0.0578911981 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
4 Hb_004963_030 0.0638086072 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_004225_050 0.0665747713 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
6 Hb_000343_250 0.0666100772 - - PREDICTED: protein CASC3 [Jatropha curcas]
7 Hb_002496_010 0.0702029481 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
8 Hb_002218_090 0.0702965665 - - Poly(rC)-binding protein, putative [Ricinus communis]
9 Hb_001004_060 0.0706770429 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
10 Hb_021443_040 0.0727532338 - - acc synthase, putative [Ricinus communis]
11 Hb_028912_050 0.0731044863 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
12 Hb_000028_480 0.0734647863 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
13 Hb_000346_060 0.0735180055 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
14 Hb_011129_040 0.0745389935 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
15 Hb_002732_040 0.0754971295 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
16 Hb_002263_020 0.0765056217 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
17 Hb_000976_300 0.0792814716 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
18 Hb_007426_110 0.0805410197 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
19 Hb_003544_140 0.0810400662 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
20 Hb_001141_020 0.0816499515 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_100 Hb_002849_100 Hb_188063_020 Hb_188063_020 Hb_002849_100--Hb_188063_020 Hb_010710_070 Hb_010710_070 Hb_002849_100--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_002849_100--Hb_004963_030 Hb_004225_050 Hb_004225_050 Hb_002849_100--Hb_004225_050 Hb_000343_250 Hb_000343_250 Hb_002849_100--Hb_000343_250 Hb_002496_010 Hb_002496_010 Hb_002849_100--Hb_002496_010 Hb_188063_020--Hb_004225_050 Hb_028912_050 Hb_028912_050 Hb_188063_020--Hb_028912_050 Hb_188063_020--Hb_010710_070 Hb_188063_020--Hb_004963_030 Hb_009548_020 Hb_009548_020 Hb_188063_020--Hb_009548_020 Hb_010710_070--Hb_004963_030 Hb_010710_070--Hb_028912_050 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_001442_040 Hb_001442_040 Hb_010710_070--Hb_001442_040 Hb_004963_030--Hb_001442_040 Hb_001014_160 Hb_001014_160 Hb_004963_030--Hb_001014_160 Hb_004963_030--Hb_028912_050 Hb_004963_030--Hb_000343_250 Hb_004225_050--Hb_028912_050 Hb_006649_050 Hb_006649_050 Hb_004225_050--Hb_006649_050 Hb_000028_480 Hb_000028_480 Hb_004225_050--Hb_000028_480 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_000976_300 Hb_000976_300 Hb_002496_010--Hb_000976_300 Hb_007479_040 Hb_007479_040 Hb_002496_010--Hb_007479_040 Hb_002496_010--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_002496_010--Hb_002044_150 Hb_002600_150 Hb_002600_150 Hb_002496_010--Hb_002600_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.57432 8.86356 8.56424 7.11319 9.40086 13.4499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6453 7.05934 11.3912 9.44006 15.4071

CAGE analysis