Hb_000346_060

Information

Type -
Description -
Location Contig346: 44898-51722
Sequence    

Annotation

kegg
ID tcc:TCM_006692
description Basic helix-loop-helix DNA-binding superfamily protein
nr
ID KDP27585.1
description hypothetical protein JCGZ_19590 [Jatropha curcas]
swissprot
ID Q9LT23
description Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1
trembl
ID A0A067K5Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19590 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh121

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36096: 30950-51462 , PASA_asmbl_36097: 48783-49289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000346_060 0.0 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
2 Hb_007657_010 0.0600691854 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000343_250 0.061447596 - - PREDICTED: protein CASC3 [Jatropha curcas]
4 Hb_004003_040 0.0629592957 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_004097_070 0.0638410221 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
6 Hb_002732_040 0.0687451314 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
7 Hb_004963_030 0.0709245025 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_000797_040 0.0722402366 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
9 Hb_001789_190 0.0732509001 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
10 Hb_002849_100 0.0735180055 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
11 Hb_008059_010 0.074158624 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
12 Hb_000184_170 0.0743157381 - - hypothetical protein RCOM_1213430 [Ricinus communis]
13 Hb_008221_180 0.075135381 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
14 Hb_002218_090 0.0754850006 - - Poly(rC)-binding protein, putative [Ricinus communis]
15 Hb_000200_380 0.0756260066 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
16 Hb_132840_110 0.0760839106 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
17 Hb_002263_020 0.0767949572 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
18 Hb_001279_030 0.0784642146 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
19 Hb_000181_240 0.0789389039 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
20 Hb_007765_100 0.079495794 - - PREDICTED: helicase SKI2W [Jatropha curcas]

Gene co-expression network

sample Hb_000346_060 Hb_000346_060 Hb_007657_010 Hb_007657_010 Hb_000346_060--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_000346_060--Hb_000343_250 Hb_004003_040 Hb_004003_040 Hb_000346_060--Hb_004003_040 Hb_004097_070 Hb_004097_070 Hb_000346_060--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000346_060--Hb_002732_040 Hb_004963_030 Hb_004963_030 Hb_000346_060--Hb_004963_030 Hb_001902_030 Hb_001902_030 Hb_007657_010--Hb_001902_030 Hb_008221_180 Hb_008221_180 Hb_007657_010--Hb_008221_180 Hb_002263_020 Hb_002263_020 Hb_007657_010--Hb_002263_020 Hb_007657_010--Hb_000343_250 Hb_007657_010--Hb_004097_070 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000343_250--Hb_004963_030 Hb_002027_080 Hb_002027_080 Hb_004003_040--Hb_002027_080 Hb_000441_090 Hb_000441_090 Hb_004003_040--Hb_000441_090 Hb_000193_330 Hb_000193_330 Hb_004003_040--Hb_000193_330 Hb_000797_040 Hb_000797_040 Hb_004003_040--Hb_000797_040 Hb_000731_010 Hb_000731_010 Hb_004003_040--Hb_000731_010 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_004097_070--Hb_000200_380 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_002732_040--Hb_000462_060 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_000327_270 Hb_000327_270 Hb_002732_040--Hb_000327_270 Hb_010710_070 Hb_010710_070 Hb_004963_030--Hb_010710_070 Hb_001442_040 Hb_001442_040 Hb_004963_030--Hb_001442_040 Hb_188063_020 Hb_188063_020 Hb_004963_030--Hb_188063_020 Hb_001014_160 Hb_001014_160 Hb_004963_030--Hb_001014_160 Hb_028912_050 Hb_028912_050 Hb_004963_030--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2527 8.95774 10.613 9.01462 9.95314 13.4244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.61962 7.61104 8.95877 6.8136 15.7473

CAGE analysis