Hb_004003_040

Information

Type -
Description -
Location Contig4003: 46603-48294
Sequence    

Annotation

kegg
ID rcu:RCOM_1685490
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002509744.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q8W4E1
description DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana GN=RH47 PE=1 SV=2
trembl
ID B9RC60
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1685490 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39820: 46560-48860
cDNA
(Sanger)
(ID:Location)		 015_O07.ab1: 47856-48751 , 021_P19.ab1: 47860-48859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004003_040 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_000346_060 0.0629592957 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
3 Hb_002027_080 0.068492997 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
4 Hb_000441_090 0.0690339211 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
5 Hb_000193_330 0.0700529306 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
6 Hb_000797_040 0.0745721128 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
7 Hb_000731_010 0.0765337545 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
8 Hb_001163_060 0.0769165131 - - neutral/alkaline invertase [Manihot esculenta]
9 Hb_007763_070 0.0784830661 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
10 Hb_003040_050 0.0791167649 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
11 Hb_002897_090 0.0792621123 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007426_110 0.0802941978 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
13 Hb_000033_110 0.080335506 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
14 Hb_001498_010 0.0805133206 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
15 Hb_000331_560 0.0815958814 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
16 Hb_002218_090 0.0817755348 - - Poly(rC)-binding protein, putative [Ricinus communis]
17 Hb_008059_010 0.0821637082 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
18 Hb_018118_010 0.0828032329 - - DNA polymerase I, putative [Ricinus communis]
19 Hb_006501_090 0.0831121306 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
20 Hb_000538_280 0.0840016026 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]

Gene co-expression network

sample Hb_004003_040 Hb_004003_040 Hb_000346_060 Hb_000346_060 Hb_004003_040--Hb_000346_060 Hb_002027_080 Hb_002027_080 Hb_004003_040--Hb_002027_080 Hb_000441_090 Hb_000441_090 Hb_004003_040--Hb_000441_090 Hb_000193_330 Hb_000193_330 Hb_004003_040--Hb_000193_330 Hb_000797_040 Hb_000797_040 Hb_004003_040--Hb_000797_040 Hb_000731_010 Hb_000731_010 Hb_004003_040--Hb_000731_010 Hb_007657_010 Hb_007657_010 Hb_000346_060--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_000346_060--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_000346_060--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000346_060--Hb_002732_040 Hb_004963_030 Hb_004963_030 Hb_000346_060--Hb_004963_030 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_001518_080 Hb_001518_080 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_000258_070 Hb_000258_070 Hb_000441_090--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000441_090--Hb_003517_040 Hb_000317_100 Hb_000317_100 Hb_000441_090--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000441_090--Hb_005215_010 Hb_003040_050 Hb_003040_050 Hb_000441_090--Hb_003040_050 Hb_000538_280 Hb_000538_280 Hb_000193_330--Hb_000538_280 Hb_000193_330--Hb_003040_050 Hb_000181_340 Hb_000181_340 Hb_000193_330--Hb_000181_340 Hb_001163_060 Hb_001163_060 Hb_000193_330--Hb_001163_060 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070 Hb_000665_120 Hb_000665_120 Hb_000797_040--Hb_000665_120 Hb_002205_030 Hb_002205_030 Hb_000797_040--Hb_002205_030 Hb_028960_020 Hb_028960_020 Hb_000797_040--Hb_028960_020 Hb_004310_140 Hb_004310_140 Hb_000797_040--Hb_004310_140 Hb_002218_090 Hb_002218_090 Hb_000797_040--Hb_002218_090 Hb_007426_110 Hb_007426_110 Hb_000797_040--Hb_007426_110 Hb_009252_040 Hb_009252_040 Hb_000731_010--Hb_009252_040 Hb_000749_090 Hb_000749_090 Hb_000731_010--Hb_000749_090 Hb_000731_010--Hb_000538_280 Hb_000331_560 Hb_000331_560 Hb_000731_010--Hb_000331_560 Hb_135572_010 Hb_135572_010 Hb_000731_010--Hb_135572_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64421 6.13886 5.93356 5.51995 4.9052 7.49938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19159 3.87603 4.76796 4.89895 10.8475

CAGE analysis