Hb_002218_090

Information

Type -
Description -
Location Contig2218: 108410-115849
Sequence    

Annotation

kegg
ID rcu:RCOM_0607560
description Poly(rC)-binding protein, putative
nr
ID XP_002521945.1
description Poly(rC)-binding protein, putative [Ricinus communis]
swissprot
ID Q9SR13
description Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1
trembl
ID B9S7H6
description Poly(RC)-binding protein, putative OS=Ricinus communis GN=RCOM_0607560 PE=4 SV=1
Gene Ontology
ID GO:0003723
description poly -binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22982: 108366-116990 , PASA_asmbl_22983: 108366-115303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_090 0.0 - - Poly(rC)-binding protein, putative [Ricinus communis]
2 Hb_007426_110 0.0573707381 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
3 Hb_000343_250 0.0635731935 - - PREDICTED: protein CASC3 [Jatropha curcas]
4 Hb_007765_100 0.0649406123 - - PREDICTED: helicase SKI2W [Jatropha curcas]
5 Hb_000329_370 0.0658255826 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
6 Hb_006483_110 0.0673398167 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
7 Hb_005867_070 0.0681084216 - - DNA binding protein, putative [Ricinus communis]
8 Hb_002732_040 0.0683298054 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
9 Hb_001004_060 0.0689865753 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
10 Hb_000797_040 0.0689902798 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
11 Hb_002849_100 0.0702965665 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
12 Hb_002263_020 0.0704083051 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_009270_020 0.0707760726 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
14 Hb_008059_010 0.0711824603 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
15 Hb_007747_040 0.0737883272 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
16 Hb_010712_050 0.0750244616 - - PREDICTED: protein ELC-like [Jatropha curcas]
17 Hb_000346_060 0.0754850006 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
18 Hb_000039_150 0.0754858341 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
19 Hb_005489_020 0.0764139892 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008959_010 0.0764234371 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002218_090 Hb_002218_090 Hb_007426_110 Hb_007426_110 Hb_002218_090--Hb_007426_110 Hb_000343_250 Hb_000343_250 Hb_002218_090--Hb_000343_250 Hb_007765_100 Hb_007765_100 Hb_002218_090--Hb_007765_100 Hb_000329_370 Hb_000329_370 Hb_002218_090--Hb_000329_370 Hb_006483_110 Hb_006483_110 Hb_002218_090--Hb_006483_110 Hb_005867_070 Hb_005867_070 Hb_002218_090--Hb_005867_070 Hb_007426_110--Hb_006483_110 Hb_028960_020 Hb_028960_020 Hb_007426_110--Hb_028960_020 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002263_020 Hb_002263_020 Hb_007426_110--Hb_002263_020 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030 Hb_000665_120 Hb_000665_120 Hb_007765_100--Hb_000665_120 Hb_008059_010 Hb_008059_010 Hb_007765_100--Hb_008059_010 Hb_170416_010 Hb_170416_010 Hb_007765_100--Hb_170416_010 Hb_000363_310 Hb_000363_310 Hb_007765_100--Hb_000363_310 Hb_001226_150 Hb_001226_150 Hb_007765_100--Hb_001226_150 Hb_012194_030 Hb_012194_030 Hb_000329_370--Hb_012194_030 Hb_005489_020 Hb_005489_020 Hb_000329_370--Hb_005489_020 Hb_010712_050 Hb_010712_050 Hb_000329_370--Hb_010712_050 Hb_011537_050 Hb_011537_050 Hb_000329_370--Hb_011537_050 Hb_002085_030 Hb_002085_030 Hb_000329_370--Hb_002085_030 Hb_000441_120 Hb_000441_120 Hb_000329_370--Hb_000441_120 Hb_006483_110--Hb_028960_020 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_041290_020 Hb_041290_020 Hb_006483_110--Hb_041290_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0398 28.949 28.7189 17.3905 22.386 30.3665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2405 21.2878 25.5022 27.3909 37.2436

CAGE analysis